Commit c653160c authored by Yoann Dufresne's avatar Yoann Dufresne

last snake update for results

parent cb9177b2
......@@ -10,7 +10,6 @@ DEV = [0, 1]
rule generate_compare:
input:
f"{WORKDIR}/eval_compare_raw.tsv",
f"{WORKDIR}/eval_compare_simplified.tsv"
rule comparable_tsv:
......
number_try = 1
number_try = 5
threshold = 0.9
......@@ -12,7 +12,7 @@ rule d2_path_generation:
run:
best = 0
for _ in range(number_try):
shell("python3 deconvolution/main/d2_to_path_simple.py {input.barcode} {input.d2} > {output}_tmp.out")
shell("python3 deconvolution/main/d2_to_path.py {input.barcode} {input.d2} > {output}_tmp.out")
score = 0
with open(f"{output}_tmp.out") as out:
score_line = out.readlines()[-2].strip()
......
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