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Yoann DUFRESNE
linked reads molecule ordering
Commits
c653160c
Commit
c653160c
authored
May 14, 2020
by
Yoann Dufresne
Browse files
last snake update for results
parent
cb9177b2
Changes
2
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Snakefile_d2_eval
View file @
c653160c
...
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@@ -10,7 +10,6 @@ DEV = [0, 1]
rule generate_compare:
input:
f"{WORKDIR}/eval_compare_raw.tsv",
f"{WORKDIR}/eval_compare_simplified.tsv"
rule comparable_tsv:
...
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Snakefile_d2_path
View file @
c653160c
number_try =
1
number_try =
5
threshold = 0.9
...
...
@@ -12,7 +12,7 @@ rule d2_path_generation:
run:
best = 0
for _ in range(number_try):
shell("python3 deconvolution/main/d2_to_path
_simple
.py {input.barcode} {input.d2} > {output}_tmp.out")
shell("python3 deconvolution/main/d2_to_path.py {input.barcode} {input.d2} > {output}_tmp.out")
score = 0
with open(f"{output}_tmp.out") as out:
score_line = out.readlines()[-2].strip()
...
...
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