From cd20dda3bf569fa560c1330cefb93b5910148be4 Mon Sep 17 00:00:00 2001
From: Yoann Dufresne <yoann.dufresne0@gmail.com>
Date: Mon, 25 May 2020 14:49:30 +0200
Subject: [PATCH] clean repository

---
 .gitignore                    |  2 ++
 snake_exec/CMD_acc_sens       | 11 -----------
 snake_exec/CMD_table_evaluate |  9 ---------
 3 files changed, 2 insertions(+), 20 deletions(-)
 delete mode 100644 snake_exec/CMD_acc_sens
 delete mode 100644 snake_exec/CMD_table_evaluate

diff --git a/.gitignore b/.gitignore
index aee6a28..45e8191 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,8 +3,10 @@ real_data/
 art/
 **/__pycache__/
 *.pyc
+*.egg-info/
 .pytest_cache/
 .idea/
 .snakemake/
 snake_tests/
 **/*.tmp
+**/snake_*
diff --git a/snake_exec/CMD_acc_sens b/snake_exec/CMD_acc_sens
deleted file mode 100644
index d4c930d..0000000
--- a/snake_exec/CMD_acc_sens
+++ /dev/null
@@ -1,11 +0,0 @@
-#!/bin/bash
-python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf >/dev/null 2>&1
-mv d2_graph.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
-
-python ../deconvolution/main/d2_reduction.py  --output_d2_name simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf  2>&1 >/dev/null
-
-
-echo "Gb $n $d $m $dev"
-python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf $n-$d-$dev Gb 
-echo "Lcp $n $d $m $dev"
-python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf $n-$d-$dev Lcp
diff --git a/snake_exec/CMD_table_evaluate b/snake_exec/CMD_table_evaluate
deleted file mode 100644
index ecadae1..0000000
--- a/snake_exec/CMD_table_evaluate
+++ /dev/null
@@ -1,9 +0,0 @@
-#!/bin/bash
-python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf
-mv d2_graph.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf
-
-python ../deconvolution/main/d2_reduction.py  --output_d2_name simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph.gexf  
-
-python ../deconvolution/main/d2_to_path_simple.py simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced.gexf
-
-python ../deconvolution/main/evaluate.py --type path --barcode_graph simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf simu_0_bar_n"$n"_d"$d"_m"$m"-dev"$dev".gexf.d2_graph_reduced_path.gexf
-- 
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