Commits · 1c653eb84a2d0a1b5ede469744f6cc75f586eff6 · Yoann DUFRESNE / linked reads molecule ordering

13 May, 2020 2 commits
- allow jumps in increasing sequence · 1c653eb8
  Yoann Dufresne authored May 13, 2020
  
  1c653eb8
- bugged version of barcode ordonancer · 97b187fc
  Yoann Dufresne authored May 13, 2020
  
  97b187fc
12 May, 2020 6 commits
- partial order bad greedy ok · 7d2ef666
  Yoann Dufresne authored May 12, 2020
  
  7d2ef666
- correct all rule · 83e8d871
  Yoann Dufresne authored May 12, 2020
  
  83e8d871
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 91643b3c
  Yoann Dufresne authored May 12, 2020
  
  91643b3c
- local score computation · 5baf420d
  Yoann Dufresne authored May 12, 2020
  
  5baf420d
- fix for accuracy of lcp-graph path detection algo · 86fce860
  Rayan Chikhi authored May 12, 2020
  
  86fce860
- partial order datastructure + add right · 01d8b380
  Yoann Dufresne authored May 12, 2020
  
  01d8b380
11 May, 2020 4 commits
- bad greedy path · a2baf0b0
  Yoann Dufresne authored May 11, 2020
  
  a2baf0b0
- d2 evaluation scripts · b1a94992
  Yoann Dufresne authored May 11, 2020
  
  b1a94992
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 2ca17eb4
  Yoann Dufresne authored May 11, 2020
  
  2ca17eb4
- update snakefile for evaluate d2 graphs · 455f6e88
  Yoann Dufresne authored May 11, 2020
  
  455f6e88
08 May, 2020 1 commit
- allow deeper recursions and fixed min_mol_idx init · a5259676
  Rayan Chikhi authored May 08, 2020
  
  a5259676
07 May, 2020 4 commits
- robustness fixes · b15e9b3c
  Rayan Chikhi authored May 07, 2020
  
  b15e9b3c
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · c3537900
  Yoann Dufresne authored May 07, 2020
  
  c3537900
- evaluate coverage variables · 44261c77
  Yoann Dufresne authored May 07, 2020
  
  44261c77
- added barcode graph from ema script · d5d610e4
  rchikhi authored May 07, 2020
  
  d5d610e4
06 May, 2020 3 commits
- time optimization for evaluate method · f75e2095
  Yoann Dufresne authored May 06, 2020
  
  f75e2095
- modify Snakefile to allow not compressed output · 956c8710
  Yoann Dufresne authored May 06, 2020
  
  956c8710
- code evolution to follow udg serial representation · 6a6f0950
  Yoann Dufresne authored May 06, 2020
  
  6a6f0950
05 May, 2020 5 commits
- eval scripts · 10497ebc
  rchikhi authored May 05, 2020
  
  10497ebc
- results on true positif · 4541613e
  Yoann DUFRESNE authored May 05, 2020
  
  4541613e
- snakefile update · b1bbf1c6
  Yoann Dufresne authored May 05, 2020
  
  b1bbf1c6
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 19fc7038
  Yoann Dufresne authored May 05, 2020
  
  19fc7038
- Cliques vs udgs experiments$ · 1ff78387
  Yoann Dufresne authored May 05, 2020
  
  1ff78387
04 May, 2020 3 commits
- another wave of bugfixes on the eval script · 80b70c7a
  Rayan Chikhi authored May 04, 2020
  
  80b70c7a
- fixes · 31a82afc
  Rayan Chikhi authored May 04, 2020
  
  31a82afc
- evaluation script of molecule-generated d2 graphs · 99fef3be
  rchikhi authored May 04, 2020
  
  99fef3be
29 Apr, 2020 3 commits
- main adaptation for threshold · a304859c
  Yoann Dufresne authored Apr 29, 2020
  
  a304859c
- remove sum method to replace by a for: x2 speedup · c9f90cbf
  Yoann Dufresne authored Apr 29, 2020
  
  c9f90cbf
- optimization for divergence computation · 061f4092
  Yoann Dufresne authored Apr 29, 2020
  
  061f4092
28 Apr, 2020 1 commit
- clique graph tests · 498df34a
  Yoann Dufresne authored Apr 28, 2020
  
  498df34a
17 Apr, 2020 1 commit
- simplification of d2 construction · 2122230c
  Yoann Dufresne authored Apr 17, 2020
  
  2122230c
10 Apr, 2020 1 commit
- add debug graph outputing fort mwm · e6072e12
  Yoann Dufresne authored Apr 10, 2020
  
  e6072e12
02 Apr, 2020 3 commits
- decovolution simplification · cdd430e8
  Yoann Dufresne authored Apr 02, 2020
  
  cdd430e8
- bugfix: minimize the index size for small d-graph values · 27d8a351
  Yoann Dufresne authored Apr 02, 2020
  
  27d8a351
- bugfix: empty clique don't bug anymore · 51f71fb9
  Yoann Dufresne authored Apr 02, 2020
  
  51f71fb9
19 Feb, 2020 1 commit
- debug cluster on dict key missing · e4003d29
  Yoann Dufresne authored Feb 19, 2020
  
  e4003d29
18 Feb, 2020 2 commits
- verbose: add stdout flushing for cluster usages · 0373a992
  Yoann Dufresne authored Feb 18, 2020
  
  0373a992
- bugfix: correct filtering ; verbose: add verbose to parallel jobs · 419b3ecc
  Yoann Dufresne authored Feb 18, 2020
  
  419b3ecc