Commits · 1ff783871fe4d9e38b039702e9b6073504d9e665 · Yoann DUFRESNE / linked reads molecule ordering

05 May, 2020 1 commit
- Cliques vs udgs experiments$ · 1ff78387
  Yoann Dufresne authored May 05, 2020
  
  1ff78387
29 Apr, 2020 3 commits
- main adaptation for threshold · a304859c
  Yoann Dufresne authored Apr 29, 2020
  
  a304859c
- remove sum method to replace by a for: x2 speedup · c9f90cbf
  Yoann Dufresne authored Apr 29, 2020
  
  c9f90cbf
- optimization for divergence computation · 061f4092
  Yoann Dufresne authored Apr 29, 2020
  
  061f4092
28 Apr, 2020 1 commit
- clique graph tests · 498df34a
  Yoann Dufresne authored Apr 28, 2020
  
  498df34a
17 Apr, 2020 1 commit
- simplification of d2 construction · 2122230c
  Yoann Dufresne authored Apr 17, 2020
  
  2122230c
10 Apr, 2020 1 commit
- add debug graph outputing fort mwm · e6072e12
  Yoann Dufresne authored Apr 10, 2020
  
  e6072e12
02 Apr, 2020 3 commits
- decovolution simplification · cdd430e8
  Yoann Dufresne authored Apr 02, 2020
  
  cdd430e8
- bugfix: minimize the index size for small d-graph values · 27d8a351
  Yoann Dufresne authored Apr 02, 2020
  
  27d8a351
- bugfix: empty clique don't bug anymore · 51f71fb9
  Yoann Dufresne authored Apr 02, 2020
  
  51f71fb9
19 Feb, 2020 1 commit
- debug cluster on dict key missing · e4003d29
  Yoann Dufresne authored Feb 19, 2020
  
  e4003d29
18 Feb, 2020 2 commits
- verbose: add stdout flushing for cluster usages · 0373a992
  Yoann Dufresne authored Feb 18, 2020
  
  0373a992
- bugfix: correct filtering ; verbose: add verbose to parallel jobs · 419b3ecc
  Yoann Dufresne authored Feb 18, 2020
  
  419b3ecc
17 Feb, 2020 1 commit
- parallelism upgrade for d2 construction · 0ff34ba2
  Yoann Dufresne authored Feb 17, 2020
  
  0ff34ba2
13 Feb, 2020 5 commits
- simplification with multiple components · 0f0814d4
  Yoann Dufresne authored Feb 13, 2020
  
  0f0814d4
- merged Snakemake d2 · 448f02f1
  Yoann Dufresne authored Feb 13, 2020
  
  448f02f1
- dependances add · c21b7e83
  Yoann Dufresne authored Feb 13, 2020
  
  c21b7e83
- rename snake path · a7e4ce26
  Yoann Dufresne authored Feb 13, 2020
  
  a7e4ce26
- bugfix: fake d2 generation due to variable collisions · 59ef6b96
  Yoann Dufresne authored Feb 13, 2020
  
  59ef6b96
24 Jan, 2020 4 commits
- barcode graphe generation from genomes tuning · b79c63d1
  rchikhi authored Jan 24, 2020
  
  b79c63d1
- added genome molecule graph generation · 56839d4c
  rchikhi authored Jan 24, 2020
  
  56839d4c
- merge · 6cb17069
  rchikhi authored Jan 24, 2020
  
  6cb17069
- merge · 268fcbf6
  rchikhi authored Jan 24, 2020
  
  268fcbf6
14 Jan, 2020 1 commit
- index and clique modification · 02f87907
  Yoann Dufresne authored Jan 14, 2020
  
  02f87907
13 Jan, 2020 2 commits
- Snakefile tests · af08126f
  Yoann Dufresne authored Jan 13, 2020
  
  af08126f
- refactoring of the code to match package tree · f78f16f2
  Yoann Dufresne authored Jan 13, 2020
  
  f78f16f2
10 Jan, 2020 1 commit
- refactor index · dd190fee
  Yoann Dufresne authored Jan 10, 2020
  
  dd190fee
09 Jan, 2020 2 commits
- Formalize and make heritage for dgraph indexing · aa5766f9
  Yoann Dufresne authored Jan 09, 2020
  
  aa5766f9
- refactor directories · 5e05d845
  Yoann Dufresne authored Jan 09, 2020
  
  5e05d845
06 Jan, 2020 6 commits
- bugfix: multiple input split for snakemake d2 generation · a8692cf4
  Yoann Dufresne authored Jan 06, 2020
  
  a8692cf4
- simplify d2 snakemake interface and remove parasit prints · aba36815
  Yoann Dufresne authored Jan 06, 2020
  
  aba36815
- d2 simplification and add maxclique community detection as argument · aedced90
  Yoann Dufresne authored Jan 06, 2020
  
  aedced90
- Snakefile simplifications · 30776560
  Yoann Dufresne authored Jan 06, 2020
  
  30776560
- add mergind std dev in data generation snakefile · 0e41831c
  Yoann Dufresne authored Jan 06, 2020
  
  0e41831c
- add mergind std dev in data generation snakefile · 953ffebe
  Yoann Dufresne authored Jan 06, 2020
  
  953ffebe
03 Jan, 2020 1 commit
- some of my tests on alternative d_graphs construction techniques · b906f1b9
  rchikhi authored Jan 03, 2020
  
  b906f1b9
30 Dec, 2019 3 commits
- update Snakefile for d2 generation. Update the readme to match the snakefile · 55032d52
  Yoann Dufresne authored Dec 30, 2019
  
  55032d52
- add config values for snakefile data generation and describe them in the readme · 32eb0e52
  Yoann Dufresne authored Dec 30, 2019
  
  32eb0e52
- deconvolution updates · 288449cc
  Yoann Dufresne authored Dec 30, 2019
  
  288449cc
11 Dec, 2019 1 commit
- some debug info to d2 graph construction · be448d6c
  rchikhi authored Dec 11, 2019
  
  be448d6c