Commits · 93af6c959a11cb579877c0b06cbf761d8f921a1f · Yoann DUFRESNE / linked reads molecule ordering

16 May, 2020 6 commits
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 93af6c95
  Yoann Dufresne authored May 16, 2020
  
  93af6c95
- path search refactoring · 678f0477
  Yoann Dufresne authored May 16, 2020
  
  678f0477
- added script that renames ecoli molecule graph for evaluate.py · 31dd7951
  Rayan Chikhi authored May 16, 2020
  
  31dd7951
- paper figs · 05916aa3
  Yoann Dufresne authored May 16, 2020
  
  05916aa3
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 6e12326a
  Yoann Dufresne authored May 16, 2020
  
  6e12326a
- refactor solution class · 5fd16e32
  Yoann Dufresne authored May 16, 2020
  
  5fd16e32
15 May, 2020 2 commits
- initial modifs for interval graphs evaluation acc/sens · 84920ea8
  Rayan CHIKHI authored May 15, 2020
  
  84920ea8
- sensitivity random path fix · 4782df1e
  Rayan Chikhi authored May 15, 2020
  
  4782df1e
14 May, 2020 20 commits
- last snake update for results · c653160c
  Yoann Dufresne authored May 14, 2020
  
  c653160c
- add max coverage value to the print · cb9177b2
  Yoann Dufresne authored May 14, 2020
  
  cb9177b2
- revert wrong opti · ff5bf7f0
  Yoann Dufresne authored May 14, 2020
  
  ff5bf7f0
- revert wrong opti · 9f16d4bd
  Yoann Dufresne authored May 14, 2020
  
  9f16d4bd
- greedy optimizations · 5091e494
  Yoann Dufresne authored May 14, 2020
  
  5091e494
- add third sorting critera · d1ff2f33
  Yoann Dufresne authored May 14, 2020
  
  d1ff2f33
- add third sorting critera · 8eb083f4
  Yoann Dufresne authored May 14, 2020
  
  8eb083f4
- naive branch & bound · eeab1f7a
  Yoann Dufresne authored May 14, 2020
  
  eeab1f7a
- compute both simple and raw evaluations · cba8bbe2
  Yoann Dufresne authored May 14, 2020
  
  cba8bbe2
- compute both simple and raw evaluations · 125b61bb
  Yoann Dufresne authored May 14, 2020
  
  125b61bb
- Modification for Rayan greedy · 2012224c
  Yoann Dufresne authored May 14, 2020
  
  2012224c
- fix · 0e6da685
  Rayan CHIKHI authored May 14, 2020
  
  0e6da685
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 49dbee15
  Rayan CHIKHI authored May 14, 2020
  
  49dbee15
- fix · 4cdd31ca
  Rayan CHIKHI authored May 14, 2020
  
  4cdd31ca
- ../deconvolution/main/d2_to_path_simple.py · 5183ab17
  Rayan CHIKHI authored May 14, 2020
  
  5183ab17
- d2 eval update · 00aae418
  Yoann Dufresne authored May 14, 2020
  
  00aae418
- path computation · 4a3ba830
  Yoann Dufresne authored May 14, 2020
  
  4a3ba830
- snakefile for evaluation of paths · 68945d74
  Yoann Dufresne authored May 14, 2020
  
  68945d74
- bugfix verbose arg · 26206cc7
  Yoann Dufresne authored May 14, 2020
  
  26206cc7
- verbose · a584b1b9
  Yoann Dufresne authored May 14, 2020
  
  a584b1b9
13 May, 2020 6 commits
- bugfix edit path · 0f44e223
  Yoann Dufresne authored May 13, 2020
  
  0f44e223
- longest path evaluation · 01f9f006
  Yoann Dufresne authored May 13, 2020
  
  01f9f006
- merge · c1d36427
  Rayan CHIKHI authored May 13, 2020
  
  c1d36427
- modifs to evaluate path · 9e8cd8ae
  Rayan CHIKHI authored May 13, 2020
  
  9e8cd8ae
- allow jumps in increasing sequence · 1c653eb8
  Yoann Dufresne authored May 13, 2020
  
  1c653eb8
- bugged version of barcode ordonancer · 97b187fc
  Yoann Dufresne authored May 13, 2020
  
  97b187fc
12 May, 2020 6 commits
- partial order bad greedy ok · 7d2ef666
  Yoann Dufresne authored May 12, 2020
  
  7d2ef666
- correct all rule · 83e8d871
  Yoann Dufresne authored May 12, 2020
  
  83e8d871
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 91643b3c
  Yoann Dufresne authored May 12, 2020
  
  91643b3c
- local score computation · 5baf420d
  Yoann Dufresne authored May 12, 2020
  
  5baf420d
- fix for accuracy of lcp-graph path detection algo · 86fce860
  Rayan Chikhi authored May 12, 2020
  
  86fce860
- partial order datastructure + add right · 01d8b380
  Yoann Dufresne authored May 12, 2020
  
  01d8b380