Commits · cb354bcb9837c5e67d50002e1fec037a96020248 · Yoann DUFRESNE / linked reads molecule ordering

26 May, 2020 1 commit
- modification of snakefiles according to the refactored pieces · 03f6d8de
  Yoann Dufresne authored May 26, 2020
  
  03f6d8de
25 May, 2020 3 commits
- remove last dependencies to barcode graph into lcp graphs · e268c918
  Yoann Dufresne authored May 25, 2020
  
  e268c918
- reduction + evaluation ok · 2cb22aca
  Yoann Dufresne authored May 25, 2020
  
  2cb22aca
- remove dependance to barcode graph in lcp graph loading · c6ef39a8
  Yoann Dufresne authored May 25, 2020
  
  c6ef39a8
19 May, 2020 1 commit
- more control over ground truth overlaps; also script for generating figure of... · 799c6865
  Rayan Chikhi authored May 19, 2020
```
more control over ground truth overlaps; also script for generating figure of synthetic accuracy/sens
```
  799c6865
18 May, 2020 5 commits
- figures update · 45503263
  Yoann Dufresne authored May 18, 2020
  
  45503263
- auto generation of results · 37fdd729
  Rayan CHIKHI authored May 18, 2020
  
  37fdd729
- remove bg analysis · afe8cbe7
  Yoann Dufresne authored May 18, 2020
  
  afe8cbe7
- accuracy/sensitivity figures · 5b114601
  Yoann Dufresne authored May 18, 2020
  
  5b114601
- barcode graph evaluation · beef8eba
  Yoann Dufresne authored May 18, 2020
  
  beef8eba
16 May, 2020 4 commits
- barcode total ordering computing · 15906856
  Yoann Dufresne authored May 16, 2020
  
  15906856
- path simple · aa092fa2
  Yoann Dufresne authored May 16, 2020
  
  aa092fa2
- path search refactoring · 678f0477
  Yoann Dufresne authored May 16, 2020
  
  678f0477
- added script that renames ecoli molecule graph for evaluate.py · 31dd7951
  Rayan Chikhi authored May 16, 2020
  
  31dd7951
15 May, 2020 2 commits
- initial modifs for interval graphs evaluation acc/sens · 84920ea8
  Rayan CHIKHI authored May 15, 2020
  
  84920ea8
- sensitivity random path fix · 4782df1e
  Rayan Chikhi authored May 15, 2020
  
  4782df1e
14 May, 2020 6 commits
- naive branch & bound · eeab1f7a
  Yoann Dufresne authored May 14, 2020
  
  eeab1f7a
- fix · 0e6da685
  Rayan CHIKHI authored May 14, 2020
  
  0e6da685
- fix · 4cdd31ca
  Rayan CHIKHI authored May 14, 2020
  
  4cdd31ca
- ../deconvolution/main/d2_to_path_simple.py · 5183ab17
  Rayan CHIKHI authored May 14, 2020
  
  5183ab17
- bugfix verbose arg · 26206cc7
  Yoann Dufresne authored May 14, 2020
  
  26206cc7
- verbose · a584b1b9
  Yoann Dufresne authored May 14, 2020
  
  a584b1b9
13 May, 2020 5 commits
- bugfix edit path · 0f44e223
  Yoann Dufresne authored May 13, 2020
  
  0f44e223
- longest path evaluation · 01f9f006
  Yoann Dufresne authored May 13, 2020
  
  01f9f006
- modifs to evaluate path · 9e8cd8ae
  Rayan CHIKHI authored May 13, 2020
  
  9e8cd8ae
- allow jumps in increasing sequence · 1c653eb8
  Yoann Dufresne authored May 13, 2020
  
  1c653eb8
- bugged version of barcode ordonancer · 97b187fc
  Yoann Dufresne authored May 13, 2020
  
  97b187fc
12 May, 2020 2 commits
- partial order bad greedy ok · 7d2ef666
  Yoann Dufresne authored May 12, 2020
  
  7d2ef666
- fix for accuracy of lcp-graph path detection algo · 86fce860
  Rayan Chikhi authored May 12, 2020
  
  86fce860
11 May, 2020 1 commit
- bad greedy path · a2baf0b0
  Yoann Dufresne authored May 11, 2020
  
  a2baf0b0
08 May, 2020 1 commit
- allow deeper recursions and fixed min_mol_idx init · a5259676
  Rayan Chikhi authored May 08, 2020
  
  a5259676
07 May, 2020 2 commits
- robustness fixes · b15e9b3c
  Rayan Chikhi authored May 07, 2020
  
  b15e9b3c
- evaluate coverage variables · 44261c77
  Yoann Dufresne authored May 07, 2020
  
  44261c77
06 May, 2020 2 commits
- time optimization for evaluate method · f75e2095
  Yoann Dufresne authored May 06, 2020
  
  f75e2095
- code evolution to follow udg serial representation · 6a6f0950
  Yoann Dufresne authored May 06, 2020
  
  6a6f0950
04 May, 2020 3 commits
- another wave of bugfixes on the eval script · 80b70c7a
  Rayan Chikhi authored May 04, 2020
  
  80b70c7a
- fixes · 31a82afc
  Rayan Chikhi authored May 04, 2020
  
  31a82afc
- evaluation script of molecule-generated d2 graphs · 99fef3be
  rchikhi authored May 04, 2020
  
  99fef3be
29 Apr, 2020 1 commit
- main adaptation for threshold · a304859c
  Yoann Dufresne authored Apr 29, 2020
  
  a304859c
28 Apr, 2020 1 commit
- clique graph tests · 498df34a
  Yoann Dufresne authored Apr 28, 2020
  
  498df34a