Commits · db2ebce90f50750b71ef2f0342640b8d5d13f905 · Yoann DUFRESNE / linked reads molecule ordering

13 Aug, 2019 4 commits
- fix bugs induced by the d2g heritage simplification in all the mains · db2ebce9
  Yoann Dufresne authored Aug 13, 2019
  
  db2ebce9
- refactor mains and subgraph definition to be coherent with nx graph heritage · ba61e7d2
  Yoann Dufresne authored Aug 13, 2019
  
  ba61e7d2
- transform d2g to heritate from networkx Graph instead of beeing composed of · 3474f04e
  Yoann Dufresne authored Aug 13, 2019
  
  3474f04e
- compute unitigs · 367747d2
  Yoann Dufresne authored Aug 13, 2019
  
  367747d2
09 Aug, 2019 1 commit
- simple transitive reduction done · c0020617
  Yoann Dufresne authored Aug 09, 2019
  
  c0020617
08 Aug, 2019 6 commits
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 122475c5
  Yoann Dufresne authored Aug 08, 2019
  
  122475c5
- d2 reloaded completed and tested · 4c84978d
  Yoann Dufresne authored Aug 08, 2019
  
  4c84978d
- more comments · 80c59a67
  rchikhi authored Aug 08, 2019
  
  80c59a67
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 96a90ed9
  Yoann Dufresne authored Aug 08, 2019
  
  96a90ed9
- reload d2 nx graph and start reconstruct dg graphs + tests · d7e6c8cf
  Yoann Dufresne authored Aug 08, 2019
  
  d7e6c8cf
- evaluate.py augmentations to remove bad nodes/edges from d2-graph · c880bb1d
  rchikhi authored Aug 08, 2019
  
  c880bb1d
07 Aug, 2019 5 commits
- annotation of d2-graphs given ground truth · 264169f4
  rchikhi authored Aug 07, 2019
  
  264169f4
- update tests to correspond to the new way to construct d2 graphs · 4e175f2c
  Yoann Dufresne authored Aug 07, 2019
  
  4e175f2c
- prepare d2 graph to realoding by moving construction steps to annexe functions · d5486b14
  Yoann Dufresne authored Aug 07, 2019
  
  d5486b14
- Distance tests for d2 creation ok on linear graphs · 36834b36
  Yoann Dufresne authored Aug 07, 2019
  
  36834b36
- bugfix: remove all the occurences of dominated d-graphs insted of only one · aa4f017b
  Yoann Dufresne authored Aug 07, 2019
  
  aa4f017b
06 Aug, 2019 4 commits
- conflit merging · 6318e0a5
  Yoann Dufresne authored Aug 06, 2019
  
  6318e0a5
- Description of the used scripts · 6da5aa14
  Yoann Dufresne authored Aug 06, 2019
  
  6da5aa14
- repository clarification · a6a5f6de
  Yoann Dufresne authored Aug 06, 2019
  
  a6a5f6de
- refactoring · 0d3dcbf7
  Yoann Dufresne authored Aug 06, 2019
  
  0d3dcbf7
29 Jul, 2019 2 commits
- d2 graph basic analysis completed · 2c22fc66
  Yoann Dufresne authored Jul 29, 2019
  
  2c22fc66
- evaluate longest path ok · 17971a94
  Yoann Dufresne authored Jul 29, 2019
  
  17971a94
25 Jul, 2019 1 commit
- Test and support previously writed code · 76239d13
  Yoann Dufresne authored Jul 25, 2019
  
  76239d13
16 Jul, 2019 1 commit
- Change the method to generate all the possible d-graph and the way to filter them · 31633d6a
  Yoann Dufresne authored Jul 16, 2019
  
  31633d6a
10 Jul, 2019 2 commits
- Safe script for merging a molecule graph into a uniform barcode graph · 71d73af0
  Yoann Dufresne authored Jul 10, 2019
  
  71d73af0
- rewrite molecule generation with tested code · a96e76f7
  Yoann Dufresne authored Jul 10, 2019
  
  a96e76f7
09 Jul, 2019 1 commit
- bugfix on graph manipulation for merging and test to verify it · 7e66edd0
  Yoann Dufresne authored Jul 09, 2019
  
  7e66edd0
08 Jul, 2019 1 commit
- fix test issues · 309388be
  Yoann Dufresne authored Jul 08, 2019
  
  309388be
11 Jun, 2019 1 commit
- save d2_graph · cf3ae74c
  Yoann Dufresne authored Jun 11, 2019
  
  cf3ae74c
05 Jun, 2019 1 commit
- simulation of d2_graph · 0d701c92
  Yoann Dufresne authored Jun 05, 2019
  
  0d701c92
23 May, 2019 4 commits
- unitig extraction from graph · c22be631
  Yoann Dufresne authored May 23, 2019
  
  c22be631
- parameter modification · 2439492c
  Yoann Dufresne authored May 23, 2019
  
  2439492c
- Add cache folder to gitignore · 78681d65
  Yoann Dufresne authored May 23, 2019
  
  78681d65
- remove cache compiled files · 3194b941
  Yoann Dufresne authored May 23, 2019
  
  3194b941
22 May, 2019 1 commit
- compute greedy simplification of d2 graph · 383385f7
  Yoann Dufresne authored May 22, 2019
  
  383385f7
26 Apr, 2019 1 commit
- d2 graph is working \o/ · fcdd78b1
  Yoann Dufresne authored Apr 26, 2019
  
  fcdd78b1
24 Apr, 2019 3 commits
- d2-graph reconstruction by d-1 overlapps · 897907a2
  Yoann Dufresne authored Apr 24, 2019
  
  897907a2
- add tests and correct the values from them · d27838a2
  Yoann Dufresne authored Apr 24, 2019
  
  d27838a2
- update the command lines to perform tests · 8555474c
  Yoann Dufresne authored Apr 24, 2019
  
  8555474c
23 Apr, 2019 1 commit
- add subdirectories · f5430a9b
  Yoann Dufresne authored Apr 23, 2019
  
  f5430a9b