Commits · master · Yoann DUFRESNE / linked reads molecule ordering

28 May, 2020 2 commits
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/linkedreadsmoleculeordering · 6aa7d3d0
  Yoann Dufresne authored May 28, 2020
  
  6aa7d3d0
- destructive solution fail test · 7f3d1f5b
  Yoann Dufresne authored May 28, 2020
  
  7f3d1f5b
26 May, 2020 10 commits
- Update README.md · 07123ed3
  Rayan CHIKHI authored May 26, 2020
  
  07123ed3
- rename the snakefile for evaluation · fafb4927
  Yoann Dufresne authored May 26, 2020
  
  fafb4927
- rename d2 mains to lcpg mains · adaaa105
  Yoann Dufresne authored May 26, 2020
  
  adaaa105
- refacotring udg to lcp · af2011d4
  Yoann Dufresne authored May 26, 2020
  
  af2011d4
- udg -> lcp refactoring · f2e45da9
  Yoann Dufresne authored May 26, 2020
  
  f2e45da9
- refactor lcp algorithms · 5cc89481
  Yoann Dufresne authored May 26, 2020
  
  5cc89481
- rename d2g to lcpg · 2025c898
  Yoann Dufresne authored May 26, 2020
  
  2025c898
- merged main · cb354bcb
  Yoann Dufresne authored May 26, 2020
  
  cb354bcb
- README update · 34adf732
  Yoann Dufresne authored May 26, 2020
  
  34adf732
- modification of snakefiles according to the refactored pieces · 03f6d8de
  Yoann Dufresne authored May 26, 2020
  
  03f6d8de
25 May, 2020 5 commits
- remove last dependencies to barcode graph into lcp graphs · e268c918
  Yoann Dufresne authored May 25, 2020
  
  e268c918
- reduction + evaluation ok · 2cb22aca
  Yoann Dufresne authored May 25, 2020
  
  2cb22aca
- remove dependance to barcode graph in lcp graph loading · c6ef39a8
  Yoann Dufresne authored May 25, 2020
  
  c6ef39a8
- clean repo · c97d2571
  Yoann Dufresne authored May 25, 2020
  
  c97d2571
- clean repository · cd20dda3
  Yoann Dufresne authored May 25, 2020
  
  cd20dda3
19 May, 2020 1 commit
- more control over ground truth overlaps; also script for generating figure of... · 799c6865
  Rayan Chikhi authored May 19, 2020
```
more control over ground truth overlaps; also script for generating figure of synthetic accuracy/sens
```
  799c6865
18 May, 2020 10 commits
- figures to replace table 1 · 0c032479
  Yoann Dufresne authored May 18, 2020
  
  0c032479
- Gb renamed to BG · efa6923a
  Rayan CHIKHI authored May 18, 2020
  
  efa6923a
- 10k data · d51c4287
  Rayan CHIKHI authored May 18, 2020
  
  d51c4287
- figures update · 45503263
  Yoann Dufresne authored May 18, 2020
  
  45503263
- more complete fig1 5k results · df809076
  Rayan CHIKHI authored May 18, 2020
  
  df809076
- auto generation of results · 37fdd729
  Rayan CHIKHI authored May 18, 2020
  
  37fdd729
- remove bg analysis · afe8cbe7
  Yoann Dufresne authored May 18, 2020
  
  afe8cbe7
- accuracy/sensitivity figures · 5b114601
  Yoann Dufresne authored May 18, 2020
  
  5b114601
- barcode graph evaluation · beef8eba
  Yoann Dufresne authored May 18, 2020
  
  beef8eba
- update readme regarding the ongoing work · 2403e42b
  Yoann Dufresne authored May 18, 2020
  
  2403e42b
17 May, 2020 1 commit
- bugfix d2_algo · ed49295c
  Yoann Dufresne authored May 17, 2020
  
  ed49295c
16 May, 2020 8 commits
- barcode total ordering computing · 15906856
  Yoann Dufresne authored May 16, 2020
  
  15906856
- path simple · aa092fa2
  Yoann Dufresne authored May 16, 2020
  
  aa092fa2
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 93af6c95
  Yoann Dufresne authored May 16, 2020
  
  93af6c95
- path search refactoring · 678f0477
  Yoann Dufresne authored May 16, 2020
  
  678f0477
- added script that renames ecoli molecule graph for evaluate.py · 31dd7951
  Rayan Chikhi authored May 16, 2020
  
  31dd7951
- paper figs · 05916aa3
  Yoann Dufresne authored May 16, 2020
  
  05916aa3
- Merge branch 'master' of gitlab.pasteur.fr:ydufresne/10x-deconvolve · 6e12326a
  Yoann Dufresne authored May 16, 2020
  
  6e12326a
- refactor solution class · 5fd16e32
  Yoann Dufresne authored May 16, 2020
  
  5fd16e32
15 May, 2020 2 commits
- initial modifs for interval graphs evaluation acc/sens · 84920ea8
  Rayan CHIKHI authored May 15, 2020
  
  84920ea8
- sensitivity random path fix · 4782df1e
  Rayan Chikhi authored May 15, 2020
  
  4782df1e
14 May, 2020 1 commit
- last snake update for results · c653160c
  Yoann Dufresne authored May 14, 2020
  
  c653160c