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linked reads molecule ordering
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Yoann DUFRESNE
linked reads molecule ordering
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799c6865f3e09a4abfe3217a719fccc46af7df1c...c97d25713ef06880570b8ecfc6782071f05f0cbe
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c97d25713ef06880570b8ecfc6782071f05f0cbe
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799c6865f3e09a4abfe3217a719fccc46af7df1c
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Commits (2)
clean repository
· cd20dda3
Yoann Dufresne
authored
May 25, 2020
cd20dda3
clean repo
· c97d2571
Yoann Dufresne
authored
May 25, 2020
c97d2571
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.gitignore
.gitignore
+2
-0
snake_exec/CMD_acc_sens
snake_exec/CMD_acc_sens
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snake_exec/CMD_table_evaluate
snake_exec/CMD_table_evaluate
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.gitignore
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c97d2571
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@@ -3,8 +3,10 @@ real_data/
art/
**/__pycache__/
*.pyc
*.egg-info/
.pytest_cache/
.idea/
.snakemake/
snake_tests/
**/*.tmp
**/snake_*
snake_exec/CMD_acc_sens
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799c6865
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n
"
$n
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_d
"
$d
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_m
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$m
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-dev
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$dev
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.gexf
>
/dev/null 2>&1
mv
d2_graph.gexf simu_0_bar_n
"
$n
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_d
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$d
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_m
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$m
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$dev
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.gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py
--output_d2_name
simu_0_bar_n
"
$n
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_d
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$d
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_m
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$m
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-dev
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$dev
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.gexf.d2_graph_reduced.gexf simu_0_bar_n
"
$n
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_d
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$d
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_m
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$dev
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.gexf simu_0_bar_n
"
$n
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_d
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$d
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_m
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$m
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-dev
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$dev
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.gexf.d2_graph.gexf 2>&1
>
/dev/null
#echo "Gb $n $d $m $dev"
python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n
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.gexf
$n
-
$d
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$dev
Gb
#echo "Lcp $n $d $m $dev"
python ../deconvolution/main/d2_random_path_evaluation.py simu_0_bar_n
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_d
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$d
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_m
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-dev
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$n
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$d
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$dev
Lcp
snake_exec/CMD_table_evaluate
deleted
100644 → 0
View file @
799c6865
#!/bin/bash
python3 ../deconvolution/main/to_d2_graph.py simu_0_bar_n
"
$n
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_d
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$d
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_m
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$m
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-dev
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$dev
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.gexf
mv
d2_graph.gexf simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
"
$dev
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.gexf.d2_graph.gexf
python ../deconvolution/main/d2_reduction.py
--output_d2_name
simu_0_bar_n
"
$n
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_d
"
$d
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_m
"
$m
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-dev
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$dev
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.gexf.d2_graph_reduced.gexf simu_0_bar_n
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.gexf simu_0_bar_n
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python ../deconvolution/main/d2_to_path_simple.py simu_0_bar_n
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.gexf simu_0_bar_n
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$dev
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python ../deconvolution/main/evaluate.py
--type
path
--barcode_graph
simu_0_bar_n
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$n
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$d
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$m
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.gexf simu_0_bar_n
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.gexf.d2_graph_reduced_path.gexf