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Amine GHOZLANE
shaman
Commits
61d1fe59
Commit
61d1fe59
authored
Sep 13, 2016
by
Amine GHOZLANE
Browse files
Code cleaning and add shamanapp
parent
6f2a42da
Changes
108
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Inline
Side-by-side
libraries_updates.R
View file @
61d1fe59
...
...
@@ -27,18 +27,18 @@ system(command=paste('sed -i .bck -e "s/d3\\.min/d3/g" ', .libPaths(), '/d3heatm
#### replacement of the css cals of the rNVD3 ####
# get the rNVD3 path
rNVD3_path
=
paste
(
.libPaths
(),
'rNVD3/nvd3/css/'
,
sep
=
'/'
)
#
rNVD3_path = paste(.libPaths(), 'rNVD3/nvd3/css/', sep='/')
# get the path of the current source. may need to be modified (parent.frame(1) or parent.frame(2) or parent.frame(3) or else)
current_path
=
dirname
(
parent.frame
(
2
)
$
ofile
)
#
current_path = dirname(parent.frame(2)$ofile)
# get the css files path
css_files
=
dir
(
path
=
current_path
,
pattern
=
"*.css$"
,
full.names
=
T
)
#
css_files = dir(path=current_path, pattern = "*.css$", full.names = T)
# create the function to copy the css file
cp_to_rNVD3
=
function
(
p
,
dest
){
system
(
paste
(
'cp'
,
p
,
dest
))
}
#
cp_to_rNVD3 = function(p, dest){
#
system(paste('cp', p, dest))
#
}
#apply the copy to all the css files
sapply
(
css_files
,
cp_to_rNVD3
,
rNVD3_path
)
#
sapply(css_files, cp_to_rNVD3, rNVD3_path)
# first get d3heatmap javascript library path
scatterD3_path
=
paste
(
.libPaths
(),
'scatterD3/htmlwidgets/'
,
sep
=
'/'
)
...
...
www/base/BaseContrast_144854511.txt
deleted
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"WT_0_6" "Delta_0_6" "DeltaCompl_0_6" "Delta_DeltaCompl_0_6" "WT_0_24" "Delta_0_24" "DeltaCompl_0_24" "Delta_DCompl_0_24" "Delta_WT_0_24" "Dcompl_WT_0_6" "Dcompl_WT_0_24"
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
-1 -1 -1 0 -1 -1 -1 0 0 0 0
1 1 1 0 0 0 0 0 0 0 0
0 0 0 0 1 1 1 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 -1 0 -1 0 -1 0 -1 -1 0 0
0 0 -1 1 0 0 -1 1 0 -1 -1
-1 0 0 0 -1 0 0 0 1 1 1
0 1 0 1 0 0 0 0 0 0 0
0 0 1 -1 0 0 0 0 0 1 0
1 0 0 0 0 0 0 0 0 -1 0
0 0 0 0 0 1 0 1 1 0 0
0 0 0 0 0 0 1 -1 0 0 1
0 0 0 0 1 0 0 0 -1 0 -1
www/base/BaseContrast_147961524.txt
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www/base/BaseContrast_150596656.txt
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"WT_0_6" "Delta_0_6" "DeltaCompl_0_6" "Delta_DeltaCompl_0_6" "Delta_WT_0_6" "WT_0_24" "Delta_0_24" "DeltaCompl_0_24" "Delta_DCompl_0_24" "Delta_WT_0_24" "Contrast name"
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
-1 -1 -1 0 0 -1 -1 -1 0 0 0
1 1 1 0 0 0 0 0 0 0 0
0 0 0 0 0 1 1 1 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0
0 -1 0 -1 -1 0 -1 0 -1 -1 0
0 0 -1 1 0 0 0 -1 1 0 0
-1 0 0 0 1 -1 0 0 0 1 0
0 1 0 1 1 0 0 0 0 0 0
0 0 1 -1 0 0 0 0 0 0 0
1 0 0 0 -1 0 0 0 0 0 0
0 0 0 0 0 0 1 0 1 1 0
0 0 0 0 0 0 0 1 -1 0 0
0 0 0 0 0 1 0 0 0 -1 0
www/base/BaseContrast_157026926.txt
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www/base/BaseContrast_171123185.txt
deleted
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"Name..." "Name....1" "Name..."
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
0 0 0
www/base/BaseContrast_173166537.txt
deleted
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www/base/BaseContrast_174816998.txt
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www/base/BaseContrast_182562001.txt
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www/base/BaseContrast_185014214.txt
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www/base/BaseContrast_190403743.txt
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www/base/BaseContrast_19719537.txt
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www/base/BaseContrast_215166327.txt
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www/base/BaseContrast_215842747.txt
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www/base/BaseContrast_217476693.txt
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www/base/BaseContrast_246391129.txt
deleted
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www/base/BaseContrast_249301823.txt
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www/base/BaseContrast_250802536.txt
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www/base/BaseContrast_253964301.txt
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www/base/BaseContrast_258758992.txt
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