Add stringr library

Dockerfile

 FROM ubuntu:18.04
-ARG SOURCE_VERSION=202009
+ARG SOURCE_VERSION=202102
 MAINTAINER Amine Ghozlane "amine.ghozlane@pasteur.fr"
 
 RUN apt-get update && apt-get install -y \

README.md

@@ -51,7 +51,7 @@ docker pull aghozlane/shaman
 SHAMAN is available for R=3.6.1. Packrat framework allows an easy installation of all the dependencies. Of note, raw data submission is not possible with this version.
 ```
 # Download packrat package
-wget ftp://shiny01.hosting.pasteur.fr/pub/shaman_package_202009.tar.gz
+wget ftp://shiny01.hosting.pasteur.fr/pub/shaman_package_202102.tar.gz
 mkdir packrat/
 ```
 Now you can run R:
@@ -120,8 +120,8 @@ If you have any comments, questions or suggestions, or need help to use SHAMAN,
 ## Acknowledgements
 
 The main contributors to SHAMAN:
+Amine Ghozlane (Maintainer, coding, testing, documentation, evaluation, packaging),
 Stevenn Volant (Initiator, coding, testing, documentation, evaluation),
-Amine Ghozlane (Coding, testing, documentation, evaluation, packaging),
 Perrine Woringer (Coding, testing, documentation, feature suggestions),
 Pierre Lechat (Coding, testing, feature suggestions)  
 

conda_inst/meta.yaml

@@ -71,6 +71,7 @@ requirements:
         - r-devtools
         - r-shinytoastr
         - r-shinydashboardshaman
+        - r-stringr
         - lockfile
         - python-daemon
         - bioblend

ui.R

@@ -228,13 +228,13 @@ function(request) {
                                     tabPanel("R install with Packrat (linux only)",
                                              p("SHAMAN is available for R=3.6.1. Packrat framework allows an easy installation of all the dependencies. Of note, raw data submission is not possible with this version.",style = "font-family: 'times'; font-si16pt"),
                                              mainPanel(div(style = 'max-width: 900px; word-wrap: break-word;',
-                                                           "# Download packrat package",br(),"wget ftp://shiny01.hosting.pasteur.fr/pub/shaman_package_202009.tar.gz", br(),
+                                                           "# Download packrat package",br(),"wget ftp://shiny01.hosting.pasteur.fr/pub/shaman_package_202102.tar.gz", br(),
                                                            "mkdir packrat/"), width=9,class="mainwell"),
                                              p("Now you can run R:"),
                                              mainPanel(div(style = 'max-width: 900px; word-wrap: break-word;',
                                                            "install.packages(\"devtools\")",br(),
                                                            "devtools::install_github(\"rstudio/packrat\")",br(),
-                                                           "packrat::unbundle(\"shaman_package_202009.tar.gz\", \"packrat/\")", br(),
+                                                           "packrat::unbundle(\"shaman_package_202102.tar.gz\", \"packrat/\")", br(),
                                                            "packrat::init(\"packrat/shaman\")",br(),
                                                            "system(\"Rscript -e 'shiny::runGitHub(\\\"pierreLec/KronaRShy\\\",port=5438)'\",wait=FALSE)",
                                                            br(),"shiny::runGitHub('aghozlane/shaman')"),width=9,class="mainwell")),