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Amine GHOZLANE
shaman
Commits
b5c0fcb5
Commit
b5c0fcb5
authored
Aug 21, 2019
by
Amine GHOZLANE
Browse files
Reorder and clean
parent
36c3bda6
Pipeline
#13910
passed with stage
in 46 minutes and 22 seconds
Changes
2
Pipelines
2
Hide whitespace changes
Inline
Side-by-side
.gitlab-ci.yml
View file @
b5c0fcb5
stages
:
-
build
-
build_dev
-
build_master
services
:
-
docker:dind
...
...
@@ -8,16 +9,28 @@ variables:
DOCKER_HOST
:
tcp://localhost:2375
build_
master
:
build_
dev
:
image
:
docker:latest
stage
:
build
stage
:
build
_dev
variables
:
CI_DEBUG_TRACE
:
"
false"
script
:
-
docker login -u "$CI_REGISTRY_USER" -p "$CI_REGISTRY_PASSWORD" $CI_REGISTRY
-
docker build
--cache-from "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_REF_SLUG"
--tag "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHORT_SHA"
.
-
docker push "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHORT_SHA"
\ No newline at end of file
-
docker push "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHORT_SHA"
only
:
-
dev
build_master
:
image
:
docker:latest
stage
:
build_master
variables
:
CI_DEBUG_TRACE
:
"
false"
script
:
-
docker login -u "$DOCKER_USER" -p "$DOCKER_PASS"
-
docker build -t aghozlane/shaman .
-
docker push -t aghozlane/shaman
only
:
-
master
\ No newline at end of file
LoadPackages.R
View file @
b5c0fcb5
...
...
@@ -213,6 +213,17 @@ if(!require("visNetwork")){
library
(
visNetwork
)
}
if
(
!
require
(
"shinytoastr"
)){
install.packages
(
"shinytoastr"
)
library
(
shinytoastr
)
}
if
(
!
require
(
"scatterD3"
))
{
#devtools::install_github('aghozlane/scatterD3')
install.packages
(
"scatterD3"
,
repos
=
"https://cran.univ-paris1.fr/"
)
library
(
scatterD3
)
}
if
(
!
require
(
devtools
))
{
install.packages
(
'devtools'
,
repos
=
"https://cran.univ-paris1.fr/"
)
library
(
devtools
)
...
...
@@ -223,11 +234,6 @@ if(!require("shinydashboardshaman")){
library
(
shinydashboardshaman
)
}
if
(
!
require
(
"treeWeightD3"
)){
devtools
::
install_github
(
'pierreLec/treeWeightD3'
)
library
(
treeWeightD3
)
}
if
(
!
require
(
"d3heatmap"
))
{
#devtools::install_github('aghozlane/d3heatmap')
devtools
::
install_github
(
"rstudio/d3heatmap"
)
...
...
@@ -241,15 +247,14 @@ if (!require("biomformatshaman")){
library
(
biomformatshaman
)
}
if
(
!
require
(
"scatterD3"
))
{
#devtools::install_github('aghozlane/scatterD3')
install.packages
(
"scatterD3"
,
repos
=
"https://cran.univ-paris1.fr/"
)
library
(
scatterD3
)
if
(
!
require
(
"rNVD3shaman"
))
{
devtools
::
install_github
(
'aghozlane/rNVD3shaman'
)
library
(
rNVD3shaman
)
}
if
(
!
require
(
"
rNVD3
"
))
{
devtools
::
install_github
(
'
aghozlane/
rNVD3'
)
library
(
rNVD3
)
if
(
!
require
(
"
DESeq2shaman
"
))
{
devtools
::
install_github
(
"
aghozlane/
DESeq2shaman"
)
library
(
DESeq2shaman
)
}
if
(
!
require
(
"PhyloTreeMetaR"
)){
...
...
@@ -257,17 +262,12 @@ if(!require("PhyloTreeMetaR")){
library
(
PhyloTreeMetaR
)
}
if
(
!
require
(
"
shinytoastr
"
)){
devtools
::
install_github
(
"mangothecat/shinytoastr"
)
library
(
shinytoastr
)
if
(
!
require
(
"
treeWeightD3
"
)){
devtools
::
install_github
(
'pierreLec/treeWeightD3'
)
library
(
treeWeightD3
)
}
if
(
!
require
(
"d3vennR"
)){
devtools
::
install_github
(
"timelyportfolio/d3vennR"
)
library
(
d3vennR
)
}
if
(
!
require
(
"DESeq2shaman"
))
{
devtools
::
install_github
(
"aghozlane/DESeq2shaman"
)
library
(
DESeq2shaman
)
}
\ No newline at end of file
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