Commit f5c4129a authored by Amine  GHOZLANE's avatar Amine GHOZLANE

Add several example dataset and debug the project loading

parent 5d217f8f
Pipeline #14199 passed with stage
in 13 minutes and 30 seconds
*.Rproj.user
*.Rhistory
*.RData
.DS_Store
.Rproj.user
www/masque.png
stages:
- build_conda
- build_dev
- build_master
- build_conda
services:
- docker:dind
......@@ -34,8 +35,7 @@ build_master:
- docker login -u "$DOCKER_USER" -p "$DOCKER_PASS"
- docker build -t aghozlane/shaman .
- docker push aghozlane/shaman
except:
- dev
only:
- master
......@@ -54,6 +54,7 @@ build_conda:
- conda install -y conda-verify
- conda install -y anaconda-client
- conda install -y conda-build
- conda install -y git
script:
- anaconda login --username "$DOCKER_USER" --password "$DOCKER_PASS"
- conda build conda_inst
......
......@@ -1444,10 +1444,10 @@ shinyServer(function(input, output,session) {
reset("fileBiom")
reset("fileTree")
#PS = Project_status(values$masque_key,values$curdir)
values$biom_masque = paste(values$curdir,"www","masque","done",paste("file",values$masque_key,sep=""),paste("shaman_silva.biom",sep=""),sep= .Platform$file.sep)
values$tree_masque = paste(values$curdir,"www","masque","done",paste("file",values$masque_key,sep=""),paste("shaman_silva_tree.nhx",sep=""),sep= .Platform$file.sep)
values$biom_masque = paste(values$curdir,"www","masque","done",paste("file",values$masque_key,sep=""),paste("shaman_",DemoDataset[[1]][2],".biom",sep=""),sep= .Platform$file.sep)
values$tree_masque = paste(values$curdir,"www","masque","done",paste("file",values$masque_key,sep=""),paste("shaman_",DemoDataset[[1]][2],"_tree.nhx",sep=""),sep= .Platform$file.sep)
#sendSweetAlert(messageId="DemoDataset", title = "Success", text = paste("Data of", DemoDataset[[1]][2], "were successfully loaded. You can go to statistical analysis section."), type = "success", html=TRUE)
sendSweetAlert(session, title = "Success", text = paste("Data of", DemoDataset[[1]][2], "were successfully loaded. You can go to statistical analysis section."), type = "success", html=TRUE)
sendSweetAlert(session, title = "Success", text = paste("Data of", DemoDataset[[1]][3], "were successfully loaded. You can go to statistical analysis section."), type = "success", html=TRUE)
removeCssClass(class = 'pwdRED', selector = '#password_home')
addCssClass(class = 'pwdGREEN', selector = '#password_home')
hideElement("masque-form",anim=TRUE)
......@@ -2248,7 +2248,6 @@ shinyServer(function(input, output,session) {
observeEvent(input$confirmTarget,{
target = NULL
values$biom_masque = paste(values$curdir,"www","masque","done",paste("file",values$masque_key,sep=""),paste("shaman_silva.biom",sep=""),sep= .Platform$file.sep)
# Get the old biom
if (!is.null(values$biom_masque) && file.exists(values$biom_masque)){
tryCatch(read_biom(values$biom_masque)->data,
......
......@@ -522,7 +522,14 @@ function(request) {
selectInput("FileFormat","",c("Count table & taxonomy (*.csv or *.tsv)"="fileCounts","BIOM file"="fileBiom","Project number"="projnum"),selected="fileCounts"),
conditionalPanel(condition="input.FileFormat=='fileCounts'",
checkboxInput("NoTaxoFile","No taxonomy table",value=FALSE),
selectInput("DemoDataset",h6(strong('Or select a dataset')),c("..."="...","ZymoBIOMICS mock 16S"=c("30a47fca2dc3|Volant et al. 2019 in review")),selected="...")#,
selectInput("DemoDataset",h6(strong('Or select a dataset')),
c("..."="...",
"ZymoBIOMICS mock 16S: Volant et al. 2019"=c("a1a9748bebd0|silva|Volant et al. 2019 in review"),
"Afribiota: Vonaesch et al. 2018"=c("1be225fc935c7|silva|Vonaesch et al. 2018"),
"DNA extraction protocols 16S: Angebault et al. 2018"=c("eec74b27d162|silva|Angebault et al. 2018"),
"DNA extraction protocols ITS1: Angebault et al. 2018"=c("3580714197f5|unite|Angebault et al. 2018"),
"Listeria: Quereda et al. 2016"=c("69207712064|silva|Quereda et al. 2016")),
selected="...")#,
#receiveSweetAlert(messageId = "DemoDataset")
),
conditionalPanel(condition="input.FileFormat=='projnum'",
......
{"type": "16S", "phredthres": 20, "annotationstrand": "both", "aFmax": 0.945, "aPmin": 0.75, "aSmin": 0.98, "path": "/tmp/RtmpggfRsE/Masque_files", "aCmin": 0.785, "minreadlength": 50, "mail": "amine.ghozlane@pasteur.fr", "clusteringthreshold": 0.97, "aOmax": 0.865, "host": "hg38", "name": "file1be225fc935c7", "aPmax": 0.785, "clusteringstrand": "both", "minampliconlength": 50, "dreptype": "--derep_prefix", "maxampliconlength": 0, "data_history_name": "data_shaman_2186_108", "aOmin": 0.82, "aGmin": 0.945, "aKmin": 0.75, "aFmin": 0.865, "paired": false, "result_history_name": "shaman_2186_108", "mincorrect": 80, "minabundance": 4, "contaminant": "/tmp/RtmpggfRsE/file1be225fc935c7_contaminant.fasta", "aGmax": 0.98, "aCmax": 0.82}
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Type Count Mean_length Median_length
Amplicon 13259690 246 249
Dereplication 2903184 244 249
Singleton_removed 172297 247 249
Chimera_removed 117742 247 249
OTU 2386 234 249
silva_annotation 2375
greengenes_annotation 2367
rdp_annotation 2385
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{"contaminant": "/tmp/Rtmpimkesv/file873bc712cf0_contaminant.fasta", "data_history_name": "data_shaman_37694_0", "paired": true, "host": "", "type": "16S", "pattern_R1": "_R1", "result_history_name": "shaman_37694_0", "path_R2": "/tmp/Rtmpimkesv/Masque_files_R2", "mail": "amine.ghozlane@pasteur.fr", "name": "file873bc712cf0", "path_R1": "/tmp/Rtmpimkesv/Masque_files_R1"}
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#OTU ID 1ng-25cycles-1_S38_L001_001 1ng-25cycles-2_S39_L001_001 1ng-25cycles-3_S40_L001_001 1ng-30cycles-1_S50_L001_001 1ng-30cycles-2_S51_L001_001 1ng-30cycles-3_S52_L001_001 20ng-20cycles-1_S14_L001_001 20ng-20cycles-2_S15_L001_001 20ng-20cycles-3_S16_L001_001 20ng-25cycles-1_S2_L001_001 20ng-25cycles-2_S3_L001_001 20ng-25cycles-3_S4_L001_001 5ng-25cycles-1_S26_L001_001 5ng-25cycles-2_S27_L001_001 5ng-25cycles-3_S28_L001_001 zero5ng-25cycles-1_S62_L001_001 zero5ng-25cycles-2_S63_L001_001 zero5ng-25cycles-3_S64_L001_001 zero5ng-30cycles-1_S74_L001_001 zero5ng-30cycles-2_S75_L001_001 zero5ng-30cycles-3_S76_L001_001
OTU_1 17452 27133 22628 34080 44295 26503 37448 44573 39161 39050 32932 40607 25728 29573 31779 37086 38992 27499 43560 25485 6836
OTU_10 13 0 12 22 3 5 18 18 11 24 1 12 37 0 22 22 4 16 43 8 3
OTU_11 2 1 3 28 1 2 10 11 1 11 8 8 16 6 20 5 1 9 10 13 3
OTU_12 11 29 14 55 74 41 35 48 20 45 75 62 49 65 41 18 43 19 52 52 4
OTU_13 20 40 34 76 116 38 35 70 51 70 113 79 32 74 72 43 64 24 77 48 5
OTU_14 0 6 3 8 9 8 0 0 0 0 0 0 0 3 0 12 18 5 13 6 0
OTU_15 23 62 30 79 149 57 39 72 59 86 106 100 62 47 51 51 67 34 63 90 10
OTU_16 0 2 0 4 4 0 6 3 2 5 3 1 1 2 6 1 0 2 9 5 0
OTU_17 5 0 0 4 4 0 0 1 2 4 0 7 5 1 1 0 0 1 5 0 0
OTU_18 3 1 0 14 4 0 4 4 9 2 6 4 6 5 3 1 0 1 8 5 2
OTU_19 1 4 3 10 4 2 0 0 1 0 0 0 0 2 1 14 6 1 15 5 3
OTU_2 15860 23646 22078 29667 43537 24072 36479 47320 38806 32012 25103 30496 26135 34793 32500 38523 42830 30774 39737 28634 4774
OTU_20 0 0 0 0 5 1 1 0 2 1 0 5 4 0 0 0 1 1 7 0 0
OTU_21 13 23 11 54 78 31 13 60 44 66 66 57 22 51 53 22 33 17 61 37 5
OTU_22 10 17 12 34 56 32 14 23 18 55 38 49 20 36 16 13 32 6 53 21 7
OTU_23 0 1 0 4 1 1 0 0 0 2 1 1 7 0 1 3 3 0 2 4 0
OTU_24 0 0 0 3 0 2 0 3 7 2 0 0 4 0 1 3 0 0 2 2 0
OTU_25 18 42 20 68 88 57 37 48 35 86 90 68 52 80 65 32 59 20 80 61 11
OTU_26 1 1 1 7 1 0 0 0 1 0 0 0 5 1 0 2 2 0 3 1 0
OTU_27 1 0 1 1 0 0 0 3 1 1 1 0 0 3 2 0 0 2 0 0 0
OTU_28 0 0 0 2 0 1 0 0 0 0 0 1 0 2 0 1 0 0 1 2 0
OTU_29 1 0 0 0 0 1 4 1 2 3 0 1 1 4 0 1 2 1 7 6 1
OTU_3 13125 22105 17509 23529 36814 19721 30956 43056 33082 25061 23471 26121 20873 27980 28509 32630 38907 27115 30649 23025 3775
OTU_30 2 3 0 2 0 2 1 2 0 1 0 1 0 0 0 0 0 2 2 0 0
OTU_31 1 0 0 2 2 0 0 0 0 2 2 1 0 1 1 0 0 1 4 0 0
OTU_32 31 67 36 143 204 64 86 131 66 124 135 114 86 116 117 74 109 60 189 86 20
OTU_33 111 221 114 414 591 245 197 336 241 391 448 394 231 379 317 186 311 109 506 319 61
OTU_34 0 1 0 0 1 0 0 2 0 0 3 0 2 2 1 2 2 0 2 1 0
OTU_35 0 0 0 0 3 0 4 1 0 2 0 2 0 0 0 0 0 0 2 0 0
OTU_36 0 0 0 0 1 0 0 0 0 0 0 0 2 2 0 0 0 0 4 2 0
OTU_37 1 3 2 4 7 1 5 0 0 0 2 0 0 1 5 1 3 1 2 4 0
OTU_38 225 379 195 805 1014 423 387 669 422 858 826 711 406 628 505 341 511 249 1032 668 30
OTU_39 5 2 1 1 4 3 0 0 0 4 1 0 2 3 4 0 0 0 5 0 0
OTU_4 13337 23359 16051 28762 41768 20948 35150 39582 31692 31582 26212 25297 25494 32339 34775 39042 38318 25859 39136 26583 2790
OTU_40 0 0 5 2 0 0 0 2 2 1 0 2 0 0 0 2 0 0 3 0 0
OTU_41 0 0 0 0 1 0 0 3 1 0 2 0 0 0 0 0 0 1 3 1 0
OTU_42 2 4 1 16 15 8 2 4 5 33 28 9 9 5 8 4 1 0 20 15 3
OTU_43 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2 3 0 10 0
OTU_44 195 379 163 976 1055 534 504 662 366 1009 867 564 595 730 708 421 503 222 1225 583 85
OTU_45 76 149 84 320 410 129 150 252 132 329 309 278 162 237 190 101 194 94 409 240 22
OTU_46 0 0 0 2 0 0 0 0 0 0 0 1 3 0 1 0 0 1 0 0 0
OTU_47 0 0 2 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0
OTU_48 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 2 0 0 0 0 0
OTU_49 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 6 1 1 5 2 0
OTU_5 11531 20057 16044 23534 35804 15246 26747 35766 29197 26834 24773 29176 19939 27576 27496 27523 33651 24155 31504 22764 1540
OTU_50 0 0 0 0 0 0 0 0 0 5 0 0 0 0 1 1 0 0 0 0 0
OTU_51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0
OTU_52 0 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 3 0 0
OTU_53 0 0 1 2 0 0 3 3 3 1 1 1 5 2 0 1 0 0 6 3 0
OTU_54 36 50 24 100 95 47 64 74 46 91 89 111 56 84 59 37 45 20 140 83 3
OTU_55 249 450 266 1061 1311 492 477 712 443 1093 933 930 542 916 663 398 548 274 1285 737 49
OTU_56 1 0 0 2 0 0 0 0 2 0 0 2 1 1 1 1 2 2 2 3 0
OTU_57 41 59 27 171 185 84 54 91 74 173 163 170 95 90 127 30 76 61 200 139 10
OTU_58 5 5 6 17 27 17 11 5 12 25 28 24 15 11 25 3 6 6 45 18 1
OTU_59 1 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0
OTU_6 8183 13707 10964 16276 24625 12822 18729 23977 19123 17982 17070 19830 13793 18802 17884 18929 23174 15187 21971 15719 2336
OTU_60 17 44 12 101 137 71 36 100 59 94 86 118 59 90 71 46 51 32 122 72 17
OTU_61 1 1 0 9 6 10 7 5 3 5 6 8 1 8 1 1 5 1 9 4 2
OTU_62 3 3 2 42 29 14 1 9 1 37 24 16 3 15 7 5 1 1 25 12 2
OTU_63 0 2 0 2 0 0 0 0 0 0 0 3 0 0 1 0 0 0 6 0 0
OTU_7 6506 11883 8080 11966 19193 9309 14386 19327 15146 13448 12560 13118 9135 12995 13890 15038 18146 11681 15168 11666 2165
OTU_8 5082 9047 7033 10887 16871 6722 12362 18325 14321 11921 11802 13621 9812 13294 13394 12133 15601 9962 15972 11023 651
OTU_9 7 5 17 39 8 6 29 26 19 32 1 22 47 6 51 17 0 22 58 17 3
Type Count Mean_length Median_length
Amplicon 4248638 428 427
Dereplication 1629789 428 427
Singleton_removed 40537 429 427
Chimera_removed 34496 429 427
OTU 63 354 427
silva_annotation 39
greengenes_annotation 39
rdp_annotation 62
sample Raw_reads_fwd Raw_mean_length_fwd Raw_median_length_fwd Raw_reads_rev Raw_mean_length_rev Raw_median_length_rev Trimmed Trimmed_fwd Trimmed_rev Removed Removed_fwd Removed_rev Filtered_reads_fwd Filtered_mean_length_fwd Filtered_median_length_fwd Filtered_reads_rev Filtered_mean_length_rev Filtered_median_length_rev Combined pairs Uncombined pairs Selected_dereplication Selected_singleton Selected_chimera Selected_otu Mapped_reads Mapping_percent_combined
5ng-25cycles-1_S26_L001_001 216807 300 301 216807 300 300 403438 196888 206550 27842 17587 10255 192017 265 277 192017 227 231 167270 192017 60409 1507 1277 5 153559 79.97
20ng-25cycles-1_S2_L001_001 302678 300 301 302678 300 300 560043 274679 285364 42410 25097 17313 265513 265 277 265513 224 229 228922 265513 90528 2208 1749 5 202669 76.33
1ng-30cycles-1_S50_L001_001 275152 300 301 275152 300 300 509447 250179 259268 37693 21809 15884 242096 265 277 242096 222 227 209033 242096 84557 1998 1542 7 183410 75.76
zero5ng-25cycles-1_S62_L001_001 308283 300 301 308283 300 300 569407 277786 291621 43427 26767 16660 270219 265 277 270219 225 230 233528 270219 82353 2133 1951 2 222829 82.46
1ng-25cycles-3_S40_L001_001 172137 300 301 172137 300 300 315854 154559 161295 26482 15642 10840 149233 265 277 149233 223 227 128265 149233 48587 1285 1172 1 121491 81.41
5ng-25cycles-3_S28_L001_001 285903 300 301 285903 300 300 531229 257695 273534 37412 25043 12369 252430 264 277 252430 229 234 220357 252430 77958 1986 1662 4 203446 80.6
zero5ng-25cycles-2_S63_L001_001 352123 300 301 352123 300 300 648535 318719 329816 50482 28176 22306 308459 267 277 308459 221 226 266924 308459 98469 2510 2256 2 252325 81.8
zero5ng-25cycles-3_S64_L001_001 236495 300 301 236495 300 300 437038 212481 224557 33097 21161 11936 207488 265 277 207488 227 232 180797 207488 62110 1659 1557 2 173561 83.65
zero5ng-30cycles-1_S74_L001_001 359368 300 301 359368 300 300 665454 326768 338686 49132 28451 20681 316575 266 277 316575 223 227 274564 316575 105773 2526 1974 7 243522 76.92
1ng-25cycles-2_S39_L001_001 225513 300 301 225513 300 300 410838 203514 207324 37100 18912 18188 193922 267 277 193922 218 217 165528 193922 67393 1678 1445 2 152993 78.89
20ng-20cycles-1_S14_L001_001 297586 300 301 297586 300 300 550934 268644 282290 40695 25399 15296 261634 265 277 261634 226 231 226892 261634 79872 2069 1860 3 214491 81.98
1ng-30cycles-3_S52_L001_001 256766 300 301 256766 300 300 453161 223254 229907 58344 31485 26859 206824 257 272 206824 208 205 154532 206824 86516 1969 1688 3 137773 66.61
20ng-25cycles-3_S4_L001_001 296908 300 301 296908 300 300 549201 268361 280840 41730 25666 16064 260316 265 277 260316 226 231 226248 260316 86241 2126 1726 2 202205 77.68
zero5ng-30cycles-2_S75_L001_001 242911 300 301 242911 300 300 449556 221480 228076 33397 18562 14835 213997 267 278 213997 222 227 186286 213997 69094 1759 1455 3 168284 78.64
20ng-25cycles-2_S3_L001_001 269896 300 301 269896 300 300 497132 245483 251649 39492 21246 18246 235824 267 277 235824 221 225 203843 235824 82805 2068 1612 4 178385 75.64
20ng-20cycles-3_S16_L001_001 306702 300 301 306702 300 300 567042 275507 291535 42771 27605 15166 269014 265 277 269014 228 233 234694 269014 80070 2038 1839 3 222691 82.78
zero5ng-30cycles-3_S76_L001_001 132333 300 301 132333 300 300 183132 106023 77109 80943 25722 55221 65823 247 263 65823 174 177 29501 65823 23219 370 323 1 25229 38.33
20ng-20cycles-2_S15_L001_001 386487 300 301 386487 300 300 714269 350082 364187 53920 31621 22299 339401 266 277 339401 223 228 293514 339401 106564 2767 2482 3 275380 81.14
1ng-30cycles-2_S51_L001_001 391843 300 301 391843 300 300 724875 357756 367119 53718 28996 24722 345232 267 277 345232 221 226 299176 345232 117753 2869 2373 3 268610 77.81
5ng-25cycles-2_S27_L001_001 284620 300 301 284620 300 300 528610 259384 269226 36853 21459 15394 252210 267 277 252210 224 229 219794 252210 80454 2038 1683 1 201061 79.72
1ng-25cycles-1_S38_L001_001 133794 300 301 133794 300 300 245147 120830 124317 20848 11371 9477 115918 265 277 115918 220 223 98970 115918 39064 974 870 0 92208 79.55
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(((OTU_38:0.000000007,(OTU_55:0.024285583,(OTU_58:0.008282235,(OTU_42:0.037715947,(OTU_37:0.009650750,(OTU_4:0.000000007,_R_OTU_23:0.000000007)0.932:0.000000007)0.916:0.015797335)0.891:0.010651872)0.834:0.006653109)0.998:0.031436100)0.999:0.046140362,(OTU_3:0.000000007,(OTU_15:0.040635675,_R_OTU_34:0.000000007)0.736:0.000000007)0.339:0.000000007)0.751:0.003134260,OTU_32:0.036807889,(((OTU_7:0.003251335,(OTU_45:0.020943789,OTU_54:0.018877158)0.957:0.022011936)0.977:0.035446587,((OTU_62:0.005592913,(OTU_33:0.042962896,(OTU_22:0.046702450,(OTU_1:0.000000007,_R_OTU_26:0.000000007)0.619:0.000000007)0.000:0.000000007)0.975:0.046453068)1.000:0.087808386,((OTU_36:0.222083463,((OTU_49:0.157721496,(((OTU_8:0.000000007,OTU_21:0.041004865)0.999:0.126797409,((OTU_12:0.046998885,(OTU_6:0.000000007,_R_OTU_41:0.000000007)0.000:0.000000007)0.801:0.019385127,(OTU_57:0.047097949,(OTU_13:0.047305589,(OTU_5:0.000000007,_R_OTU_31:0.000000007)0.608:0.000000007)0.000:0.000000007)0.964:0.057663607)0.997:0.110114274)0.934:0.062794932,OTU_14:0.125886218)0.837:0.054262608)0.961:0.083615213,(OTU_43:0.411388440,OTU_19:0.236221071)0.157:0.029902162)0.841:0.069591569)0.999:0.177661430,(OTU_44:0.031335407,(OTU_61:0.000000007,(OTU_25:0.030703833,(OTU_2:0.000000007,_R_OTU_39:0.000000007)0.657:0.000000007)0.000:0.000000007)0.828:0.011613514)0.957:0.047175893)0.806:0.024035221)0.915:0.031195289)0.957:0.029474712,OTU_60:0.053031794)0.780:0.012602009);
{"type": "ITS", "phredthres": 20, "annotationstrand": "both", "aFmax": 0.945, "aPmin": 0.75, "aSmin": 0.98, "path": "/tmp/RtmpIsaWzT/Masque_files", "aCmin": 0.785, "minreadlength": 50, "mail": "amine.ghozlane@pasteur.fr", "clusteringthreshold": 0.97, "aOmax": 0.865, "host": "hg38", "name": "file3580714197f5", "aPmax": 0.785, "clusteringstrand": "both", "minampliconlength": 50, "dreptype": "--derep_prefix", "maxampliconlength": 0, "data_history_name": "data_shaman_2186_109", "aOmin": 0.82, "aGmin": 0.945, "aKmin": 0.75, "aFmin": 0.865, "paired": false, "result_history_name": "shaman_2186_109", "mincorrect": 80, "minabundance": 4, "contaminant": "/tmp/RtmpIsaWzT/file3580714197f5_contaminant.fasta", "aGmax": 0.98, "aCmax": 0.82}
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(OTU_412:0.000000008,((OTU_207:0.077831082,OTU_301:0.000000008)0.993:0.113668701,OTU_402:0.031606536)0.883:0.049828591,(OTU_135:0.000000008,((((OTU_423:0.093074135,OTU_69:0.000000008)0.857:0.197101567,(OTU_370:0.116397760,(OTU_191:0.075077752,OTU_144:0.030948531)0.038:0.000000036)0.485:0.057497533)0.610:0.015041579,(OTU_92:0.081150552,OTU_209:0.000000008)0.432:0.000000008)0.741:0.020142747,((OTU_10:0.000000008,OTU_418:0.000000008)0.400:0.011364528,(((OTU_261:0.000000008,((((OTU_111:0.000000008,((OTU_333:0.000000008,(OTU_442:0.050805055,OTU_441:0.058863453)0.848:0.035897256)0.992:0.112155272,(((OTU_347:0.000000008,(OTU_13:0.000000008,OTU_312:0.000000008)0.696:0.000000008)0.348:0.000000008,(OTU_274:0.041372767,(OTU_409:0.000000014,OTU_248:0.286820477)0.591:0.063127530)0.000:0.000000008)0.854:0.028624537,(OTU_7:0.000000008,(OTU_391:0.040780646,OTU_309:0.032601524)0.000:0.000000008)0.750:0.011453263)0.893:0.050458539)0.902:0.067941704)0.000:0.000000008,((OTU_34:0.015495917,((OTU_434:0.109647396,OTU_194:0.000000008)0.999:0.523275974,OTU_107:0.623456071)0.730:0.085458338)0.763:0.052170017,((OTU_128:0.000000008,OTU_35:0.042266381)0.727:0.000000008,(OTU_20:0.012960096,OTU_102:0.112523342)0.715:0.013363638)0.900:0.072685686)0.646:0.022099067)0.940:0.047376749,(OTU_267:0.139014502,((((OTU_116:0.617103151,(((OTU_147:0.416665453,(((OTU_16:0.041613373,(OTU_127:0.019975536,OTU_53:0.033613118)1.000:0.303625511)0.950:0.065588314,OTU_60:0.022244573)0.689:0.022944336,OTU_62:0.000000008)0.998:0.597547182)0.268:0.063399682,(OTU_22:0.121437325,OTU_426:0.149466113)0.725:0.220256342)0.836:0.169476609,(OTU_81:0.631440199,((((((OTU_82:0.467343823,(OTU_159:0.197269431,OTU_433:0.503178478)0.352:0.159657597)0.106:0.039500148,(OTU_458:0.000000027,(((OTU_338:0.000000008,((((OTU_178:0.000000008,(OTU_26:0.000000008,(OTU_77:0.019308124,OTU_167:0.008502073)0.727:0.000000008)0.996:0.051576233)0.548:0.011580741,(((OTU_272:0.017517022,OTU_19:0.024133825)0.000:0.000000008,(OTU_106:0.000000008,OTU_145:0.038904277)0.129:0.000000008)0.938:0.040273553,((OTU_74:0.035235884,OTU_152:0.041807110)0.789:0.015302187,OTU_184:0.028577281)0.589:0.003228241)0.845:0.023277655)0.020:0.007697116,OTU_98:0.000000008)0.018:0.000000036,(OTU_405:0.017014794,OTU_142:0.016949708)0.888:0.024267267)0.918:0.038022298)0.763:0.009884050,(OTU_247:0.000000008,OTU_112:0.000000008)0.992:0.066281063)0.000:0.000000008,(OTU_105:0.000000014,(OTU_340:0.091394487,OTU_30:0.000000008)1.000:0.181700187)0.415:0.042170772)0.999:0.540383381)0.990:0.579689987)0.713:0.092300461,(OTU_55:0.160571978,OTU_168:0.129818114)0.996:0.324589418)0.528:0.040941594,(OTU_322:0.075420438,OTU_54:0.000000008)1.000:0.501446988)0.658:0.088208497,(OTU_44:0.592446862,(OTU_231:0.723470668,(((((OTU_124:0.250103293,OTU_33:0.208790528)0.881:0.100347012,(OTU_29:0.099456052,OTU_163:0.074547179)0.997:0.159629528)0.265:0.028538578,OTU_189:0.184499742)0.587:0.038898964,(((((OTU_85:0.110773022,OTU_79:0.169632240)0.472:0.042819219,((OTU_109:0.120166331,OTU_94:0.025805725)0.701:0.039059029,(OTU_351:0.059511184,((OTU_137:0.114853101,(OTU_174:0.097309682,(OTU_63:0.000000008,OTU_374:0.026875215)0.749:0.014703334)0.926:0.050772797)0.318:0.041823439,OTU_48:0.153082847)0.909:0.065926552)0.944:0.071084927)0.431:0.040282907)0.073:0.019828387,((((OTU_70:0.042454338,OTU_113:0.024444641)0.126:0.002346840,(((((OTU_41:0.000000008,OTU_45:0.091176552)0.000:0.000000008,OTU_429:0.018174937)0.813:0.015556854,(OTU_1:0.005696122,(OTU_103:0.020486007,OTU_78:0.019001589)0.558:0.015238299)0.784:0.014350973)0.882:0.028750366,(OTU_138:0.092656970,OTU_14:0.000000008)0.868:0.016371884)0.942:0.046368266,(OTU_64:0.000000019,OTU_164:0.042406208)0.995:0.072148974)0.826:0.019331122)0.804:0.033066495,OTU_132:0.092216709)0.818:0.032767797,OTU_71:0.153444076)0.521:0.010345099)0.998:0.164233508,(((OTU_59:0.270959236,((((OTU_459:0.044077926,OTU_18:0.000000008)0.939:0.028195486,OTU_266:0.000000008)0.914:0.027729038,(OTU_57:0.017025436,OTU_148:0.114367836)0.670:0.024470491)0.863:0.031825547,OTU_205:0.013250424)0.996:0.242885772)0.736:0.065625572,((OTU_392:0.568585098,(OTU_27:0.107204267,OTU_250:0.000000008)0.749:0.226834965)0.552:0.176752928,OTU_80:0.326162576)0.725:0.082824996)0.928:0.120277567,(OTU_123:0.190317115,OTU_171:0.213485761)0.992:0.274081492)0.881:0.065281879)0.771:0.039602385,(OTU_465:0.147669073,((OTU_169:0.035255532,OTU_255:0.002851078)0.997:0.201977300,(OTU_327:0.432028796,OTU_67:0.104475966)0.516:0.207848633)0.647:0.096544181)0.146:0.069922583)0.287:0.025480556)0.777:0.068558030,((OTU_292:0.409651670,OTU_305:0.137761849)0.950:1.030620251,OTU_456:0.000000008)0.664:0.271821846)0.710:0.055964943)0.737:0.139942539)0.814:0.114858584)0.390:0.030521144,(OTU_151:0.009695720,(OTU_389:0.034370144,OTU_89:0.000000008)0.923:0.066360275)1.000:0.457530321)0.467:0.080287637)0.630:0.129126122)0.569:0.047879334)0.857:0.157470403,((OTU_359:0.000000019,(OTU_31:0.014902062,OTU_110:0.004388430)0.537:0.042465871)0.993:0.348954189,(OTU_280:0.505141807,OTU_84:0.356987644)0.780:0.167376050)0.820:0.187519034)0.789:0.098675556,((OTU_427:0.041546603,(OTU_39:0.000000008,OTU_175:0.018880327)0.537:0.000000008)0.998:0.427440694,(OTU_445:0.018762790,(OTU_224:0.116026187,(((OTU_212:0.021784790,OTU_384:0.008834193)0.878:0.016237722,OTU_269:0.002159690)0.534:0.012160340,((OTU_4:0.009968032,OTU_157:0.005095271)0.000:0.000000008,((OTU_146:0.017468538,OTU_438:0.033055117)0.093:0.008776154,OTU_297:0.057939304)0.000:0.000000036)0.742:0.004902002)0.812:0.051073587)0.791:0.075513060)0.700:0.077619811)0.991:0.344921977)0.922:0.163104862,OTU_385:0.047883640)0.654:0.039440537)0.119:0.000000014)0.961:0.000000008,OTU_9:0.000000008)0.942:0.000000008)0.799:0.000000008,OTU_96:0.079214190)0.880:0.090315047,OTU_294:0.143342973)0.706:0.025991863)0.884:0.020067318)0.790:0.010148617)0.956:0.020822500);
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Type Count Mean_length Median_length
Amplicon 204399 240 249
Dereplication 33091 253 259
Singleton_removed 3310 257 261
Chimera_removed 3238 257 261
OTU 1 117640 117640
unite_annotation 166
findley_annotation 152
underhill_annotation 144
rdp_annotation 464
sample Raw_reads Raw_mean_length Raw_median_length Trimmed Removed Host_1_time Host_>1_time Phi_phage_1_time Phi_phage_>1_time Filtered_reads Filtered_mean_length Filtered_median_length Selected_dereplication Selected_singleton Selected_chimera Selected_otu Mapped_reads Mapping_percent_proc
MOBIO3 19154 252 256 2469 1757 2 163 0 0 17232 260 271 2714 249 241 0 16635 96.54
IHMS6 16496 187 160 3104 3232 1 600 0 0 12663 195 160 2016 216 213 0 12281 96.98
MOBIO5 21236 175 158 3601 3005 2 845 0 0 17384 182 158 2310 248 245 0 16958 97.55
MOBIO6 25688 207 249 3336 2661 1 1168 0 0 21858 216 249 2178 257 243 0 21467 98.21
IHMS5 22600 180 159 3890 3798 3 1051 0 0 17748 187 159 2432 275 269 0 17247 97.18
IHMS3 16067 265 256 3204 1729 2 85 0 0 14251 273 256 2931 287 276 0 13740 96.41
MOBIO2 21074 259 258 2963 2206 6 271 0 0 18591 266 261 3860 349 344 0 17864 96.09
IHMS1 19217 256 264 2496 1775 1 157 0 0 17284 263 265 3250 322 314 0 16780 97.08
MOBIO4 20246 257 273 3007 1683 4 183 0 0 18376 265 279 2963 308 306 0 17967 97.77
IHMS2 20006 249 272 2258 1681 1 422 0 0 17902 256 272 2494 260 259 0 17682 98.77
MOBIO1 17162 265 271 2363 1394 3 157 0 0 15608 270 271 2903 262 253 0 15090 96.68
IHMS4 17333 253 256 3082 1737 2 92 0 0 15502 261 256 3040 277 275 0 15071 97.22
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(OTU_267:0.124797848,(OTU_209:0.025291697,((((OTU_261:0.000000008,(OTU_385:0.085482956,(OTU_294:0.131645158,(OTU_10:0.000000008,OTU_418:0.000000008)0.771:0.050320385)0.816:0.074976715)0.689:0.000000011)0.945:0.000000008,OTU_9:0.000000008)0.831:0.000000008,(OTU_111:0.000000008,(((((OTU_248:0.044176223,(OTU_340:0.027560305,((OTU_434:0.044355390,OTU_194:0.075188194)0.996:0.543747319,(OTU_30:0.000000008,(OTU_105:0.000000008,((OTU_247:0.000000008,OTU_112:0.000000008)0.984:0.064082393,(OTU_338:0.000000008,(((OTU_405:0.016458056,OTU_142:0.016252573)0.923:0.024758980,(OTU_74:0.040544796,(OTU_184:0.028484795,(((OTU_272:0.016708311,OTU_19:0.029258583)0.264:0.000000008,(OTU_106:0.000000008,OTU_145:0.032579204)0.000:0.000000008)0.895:0.031651909,OTU_152:0.048980248)0.775:0.010429841)0.763:0.008352981)0.845:0.018511549)0.233:0.000000010,(OTU_98:0.000000008,(OTU_178:0.000000008,((OTU_77:0.019508556,OTU_167:0.008202310)0.743:0.000000008,OTU_26:0.000000008)0.971:0.050237475)0.320:0.015117972)0.000:0.000000026)0.946:0.040323815)0.752:0.009919759)0.849:0.056778932)0.999:0.395558748)0.542:0.067655159)0.196:0.064836290)0.833:0.127480079)0.912:0.171685516,(OTU_144:0.037510986,OTU_191:0.000000008)0.668:0.038153483)0.939:0.295747999,(((OTU_7:0.000000008,(OTU_391:0.037942681,OTU_309:0.030039557)0.924:0.000000008)0.714:0.000000008,((OTU_426:0.182630809,(OTU_81:0.568200151,OTU_22:0.241237025)0.129:0.033098630)0.068:0.074352289,(OTU_280:0.318586094,OTU_159:0.341842266)0.138:0.019311847)0.998:0.358511871)0.805:0.010422032,(OTU_347:0.000000008,((OTU_312:0.000000008,(OTU_274:0.038641880,OTU_13:0.000000008)0.462:0.000000008)0.632:0.000000008,OTU_409:0.054899734)0.000:0.000000008)0.900:0.027098054)0.601:0.005781786)0.416:0.044540029,((OTU_305:0.166289846,(OTU_333:0.000000008,((OTU_441:0.000000008,OTU_370:0.021269883)0.916:0.054500641,OTU_442:0.048214061)0.846:0.032998856)0.764:0.015615221)0.928:0.081508923,(((OTU_427:0.042440746,(OTU_39:0.000000008,OTU_175:0.019251411)0.000:0.000000008)0.996:0.391744633,(OTU_224:0.121108463,(((OTU_212:0.023557485,OTU_384:0.008975262)0.899:0.017268287,OTU_269:0.004476361)0.435:0.013345462,((OTU_157:0.005357697,OTU_4:0.010411705)0.000:0.000000008,(((OTU_445:0.107987994,OTU_297:0.053822527)0.221:0.007508732,OTU_146:0.008229934)0.288:0.007455138,OTU_438:0.037254884)0.795:0.009492287)0.587:0.002171690)0.737:0.056925738)0.950:0.233106220)0.916:0.233753162,(((OTU_84:0.272917093,((((OTU_127:0.019712797,OTU_53:0.035320136)0.990:0.259124992,(OTU_16:0.040194643,(OTU_62:0.025226765,OTU_60:0.022157000)0.968:0.071747040)0.645:0.057617883)1.000:0.670987424,(((OTU_327:0.363425677,OTU_147:0.304588429)0.348:0.159768860,OTU_55:0.342680683)0.747:0.086598134,OTU_168:0.221734381)0.543:0.080630645)0.907:0.203610568,((((OTU_29:0.083536859,OTU_163:0.091426202)0.984:0.135889620,(OTU_456:0.000000026,OTU_189:0.093294946)0.818:0.187008017)0.744:0.053043839,((OTU_458:0.071740340,(OTU_169:0.000000008,OTU_255:0.034420019)1.000:0.295829863)0.707:0.022146742,(((((OTU_64:0.000000008,(OTU_70:0.042656568,OTU_164:0.043100491)0.000:0.000000026)0.996:0.070798588,(OTU_113:0.026666409,OTU_132:0.109275181)0.306:0.020900491)0.787:0.013713420,(((OTU_429:0.015762111,(OTU_41:0.000000008,OTU_45:0.091670215)0.000:0.000000008)0.501:0.013875591,(OTU_1:0.006426048,OTU_78:0.032877968)0.785:0.016534591)0.906:0.028142246,((OTU_138:0.065020252,OTU_103:0.010137793)0.276:0.034929581,OTU_14:0.010044886)0.231:0.002313405)0.921:0.030963754)0.890:0.037148596,(((OTU_79:0.194757769,OTU_109:0.066047337)0.184:0.013002647,OTU_71:0.170707799)0.336:0.032825332,(OTU_94:0.031755416,(OTU_85:0.141698390,(OTU_351:0.061010742,((OTU_137:0.120306570,(OTU_174:0.097113881,(OTU_63:0.000000008,OTU_374:0.027034733)0.801:0.016076150)0.924:0.050234941)0.046:0.036228763,OTU_48:0.163991184)0.906:0.071683967)0.863:0.056379681)0.833:0.052421918)0.865:0.061781545)0.735:0.021636001)0.936:0.084364491,(OTU_465:0.172340221,(((OTU_27:0.093792863,OTU_250:0.000000008)0.998:0.390127563,(OTU_80:0.398889451,(OTU_59:0.301624421,((((OTU_459:0.045343913,OTU_18:0.000000008)0.923:0.027134892,OTU_266:0.000000008)0.906:0.026660077,(OTU_57:0.022035466,OTU_148:0.113069767)0.622:0.024305801)0.611:0.029686317,OTU_205:0.020400176)0.993:0.244693162)0.832:0.081343761)0.375:0.056545735)0.800:0.073891569,(OTU_123:0.275816710,OTU_171:0.236106173)0.995:0.305503119)0.799:0.070810695)0.637:0.021225099)0.903:0.077021596)0.868:0.069066389)0.860:0.068421387,(OTU_124:0.319020960,OTU_33:0.242704349)0.737:0.051756332)0.865:0.076241256)0.970:0.205678524)0.823:0.098621031,(((OTU_151:0.000000008,(OTU_389:0.034746095,OTU_89:0.000000008)0.859:0.077572436)0.996:0.655333735,OTU_433:0.588798915)0.591:0.098907606,(OTU_359:0.000000008,(OTU_31:0.008331901,OTU_110:0.012349934)0.897:0.037341055)0.946:0.213342616)0.347:0.069969098)0.771:0.066077627,(OTU_322:0.076305017,OTU_54:0.000000008)1.000:0.537246300)0.780:0.077882599)0.962:0.159677188)0.224:0.010660887)0.907:0.057574514,((((OTU_69:0.000000008,OTU_423:0.155489199)0.618:0.057418031,OTU_102:0.000000014)0.979:0.118800254,OTU_20:0.013069194)0.822:0.015892926,(OTU_128:0.000000008,OTU_35:0.039796648)0.726:0.000000008)0.940:0.081169642)0.615:0.017134246)0.864:0.036404007)0.766:0.013152476,OTU_96:0.056383942)0.856:0.027771982)0.472:0.011319033,((OTU_402:0.000000008,OTU_412:0.074145664)0.902:0.020403498,((OTU_135:0.000000008,(OTU_207:0.072538887,OTU_301:0.000000008)0.997:0.151004568)0.000:0.000000008,(OTU_34:0.071231201,OTU_92:0.089731434)0.593:0.000000026)0.984:0.000000008)0.746:0.000000014);
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((OTU_261:0.000000008,(OTU_96:0.064585762,(OTU_10:0.000000008,(OTU_135:0.011958797,(OTU_209:0.000000008,OTU_92:0.068968988)0.489:0.025358839)0.906:0.025348803)0.433:0.045275075)0.533:0.000000007)0.514:0.000000008,(((OTU_426:0.087296479,((OTU_423:0.000000035,OTU_69:0.000000008)0.495:0.253560615,OTU_309:0.000000008)0.984:0.229314461)0.000:0.016724278,((OTU_191:0.000000008,OTU_144:0.000000008)0.000:0.000000018,OTU_34:0.000000008)0.616:0.067703720)0.318:0.096733163,(OTU_111:0.000000008,((OTU_128:0.000000008,OTU_35:0.035289712)0.815:0.010995581,(OTU_20:0.014558300,OTU_102:0.080215314)0.000:0.000000007)0.792:0.049901026)0.224:0.038974885)0.767:0.033416339,((((OTU_267:0.013187369,OTU_402:0.000000008)0.000:0.000000007,(((((OTU_453:0.487175682,(OTU_176:0.595033642,(OTU_457:0.990878992,OTU_440:0.000000007)0.372:0.198666871)0.653:0.261834819)0.999:1.184198864,(OTU_312:0.000000008,(OTU_347:0.000000008,OTU_409:0.062922853)0.000:0.000000008)0.000:0.000000008)0.691:0.053094142,((OTU_391:0.034344265,OTU_7:0.000000008)0.876:0.019140986,(OTU_274:0.034983390,OTU_13:0.009094349)0.540:0.011437139)0.958:0.038645836)0.000:0.000000007,((OTU_333:0.000000007,(OTU_442:0.046243961,((OTU_116:0.752852815,OTU_370:0.000000008)0.882:0.022900287,OTU_441:0.000000008)0.917:0.051892655)0.863:0.032253259)0.000:0.000000007,OTU_305:0.199192502)0.923:0.040167408)0.669:0.021262476,(((OTU_83:0.000512094,(OTU_341:0.010627261,(OTU_104:0.026680372,OTU_190:0.023031219)0.748:0.010581410)0.837:0.022593301)0.886:0.147178969,((((OTU_416:0.158040945,(OTU_390:0.044414400,OTU_284:0.041193369)0.997:0.070823906)0.843:0.027147717,(OTU_23:0.000000034,OTU_327:0.090766062)0.000:0.000663851)0.840:0.104834640,(OTU_93:0.046390342,OTU_414:0.040654378)0.998:0.237110834)0.664:0.134222930,(OTU_292:0.406504110,OTU_282:0.357035386)0.533:0.043275558)0.882:0.149865649)1.000:0.540075890,((((((OTU_105:0.000000007,(((((OTU_405:0.016219776,OTU_142:0.015960655)0.921:0.023857514,(OTU_98:0.000000008,((OTU_184:0.028453382,(((OTU_272:0.016565481,(OTU_106:0.000000008,OTU_145:0.042264112)0.000:0.000000008)0.000:0.000000008,OTU_19:0.017377243)0.902:0.030545697,OTU_152:0.048876281)0.772:0.009937688)0.777:0.008125622,OTU_74:0.040117751)0.180:0.017380478)0.000:0.000000034)0.000:0.000000018,(OTU_178:0.000000008,(OTU_26:0.000000007,(OTU_77:0.018896215,OTU_167:0.008125306)0.710:0.000000008)0.993:0.048980643)0.314:0.014788163)0.946:0.035467202,OTU_338:0.000000008)0.751:0.007945492,(OTU_247:0.000000008,OTU_112:0.000000008)0.978:0.066072463)0.779:0.055426346)0.720:0.173927879,(OTU_30:0.000000008,OTU_340:0.098220623)0.489:0.057093423)0.685:0.173479031,(OTU_434:0.022664586,OTU_194:0.085811591)0.989:0.583765032)0.996:0.826575832,((((((OTU_212:0.021734700,OTU_384:0.008923306)0.905:0.017868344,OTU_269:0.000000008)0.546:0.015329065,(OTU_297:0.055274568,(OTU_445:0.111843164,((OTU_438:0.030801123,OTU_146:0.014972675)0.840:0.007686231,(OTU_157:0.004984226,OTU_4:0.009617844)0.000:0.000000008)0.000:0.000000025)0.480:0.003699246)0.000:0.000691381)0.727:0.054527560,OTU_224:0.110447507)0.919:0.153844732,((OTU_39:0.000000007,OTU_175:0.017342550)0.000:0.000000008,(OTU_427:0.027092965,OTU_107:0.311523451)0.123:0.013690070)1.000:0.444980563)0.441:0.056521967,(OTU_359:0.000000008,(OTU_31:0.007167923,OTU_110:0.011853345)0.905:0.042862433)0.998:0.362727426)0.617:0.073517581)0.511:0.101672464,OTU_433:0.480924679)0.000:0.102692956,(OTU_84:0.460217123,((((OTU_280:0.297202560,((OTU_151:0.000000008,(OTU_389:0.032739107,OTU_89:0.000000008)0.968:0.073760203)0.986:0.305221314,((OTU_127:0.017775542,OTU_53:0.034869071)0.983:0.214105421,(OTU_16:0.031487704,(OTU_62:0.023879723,OTU_60:0.021330360)0.989:0.072766761)0.869:0.089257107)0.977:0.294758813)0.981:0.295257569)0.889:0.203257922,((OTU_168:0.150508613,(OTU_392:0.147059724,OTU_147:0.349325340)0.986:0.375599367)0.530:0.018222013,OTU_55:0.259498873)0.770:0.157936257)0.000:0.062250700,((((((((OTU_465:0.000000025,(OTU_458:0.000000018,OTU_456:0.311707761)0.918:0.323995681)0.575:0.146296193,(((OTU_59:0.285020736,((OTU_27:0.102438758,OTU_250:0.000000008)0.997:0.358231792,((OTU_57:0.017920224,(((OTU_459:0.043151495,OTU_18:0.000000008)0.920:0.027919316,OTU_266:0.000000008)0.910:0.027313228,OTU_205:0.043597799)0.225:0.023895671)0.897:0.058374182,OTU_148:0.053374664)0.974:0.173443571)0.885:0.104729080)0.731:0.062860400,OTU_80:0.370106451)0.813:0.088467379,(OTU_123:0.334597927,OTU_171:0.028493704)1.000:0.520414176)0.854:0.091914453)0.625:0.022908343,((OTU_109:0.092395414,((((OTU_85:0.099890041,OTU_79:0.184585875)0.549:0.041322768,(((OTU_174:0.089354748,(OTU_63:0.000000007,OTU_374:0.025253867)0.805:0.017119187)0.906:0.047186474,(OTU_137:0.097980812,OTU_48:0.152283470)0.093:0.034180997)0.936:0.070274800,OTU_351:0.059276979)0.948:0.069332985)0.101:0.022668719,OTU_94:0.050753776)0.460:0.020666059,OTU_71:0.171531669)0.069:0.025986201)0.678:0.019323764,(((OTU_113:0.019247196,OTU_70:0.043534169)0.729:0.017409107,((OTU_64:0.005234575,OTU_164:0.036594557)0.957:0.050538454,OTU_132:0.098984707)0.628:0.020900911)0.835:0.020206825,(((OTU_138:0.058305637,OTU_103:0.009818085)0.326:0.038561067,OTU_14:0.010292363)0.079:0.001257753,((OTU_429:0.016684618,(OTU_41:0.000000007,OTU_45:0.091703648)0.000:0.000000007)0.594:0.014548745,(OTU_1:0.006099022,OTU_78:0.031052657)0.796:0.015089081)0.894:0.028587349)0.880:0.027109060)0.917:0.048012844)0.975:0.113231250)0.431:0.037295340,OTU_75:0.333038645)0.810:0.059788132,(OTU_67:0.312827443,(OTU_169:0.000000008,OTU_255:0.032716199)0.994:0.171856886)0.940:0.107538325)0.714:0.036962620,((OTU_163:0.078410125,OTU_29:0.086842710)0.997:0.174377057,OTU_189:0.232686745)0.495:0.023245580)0.978:0.196761544,(OTU_124:0.128168735,OTU_33:0.188847753)0.907:0.104172829)0.317:0.071328395,OTU_231:0.513615070)0.896:0.205816679)0.849:0.119827197,((OTU_322:0.049573408,OTU_54:0.020503564)0.974:0.268078549,((OTU_159:0.293753981,(OTU_82:0.249782169,OTU_81:0.225972318)0.874:0.188761444)0.417:0.075112317,OTU_22:0.264747337)0.940:0.245259056)0.882:0.171335008)0.703:0.076996236)0.253:0.044301181)0.000:0.029948507)0.944:0.143255007)0.906:0.067857613)0.993:0.049896790,((OTU_294:0.009908982,(OTU_412:0.000000008,OTU_418:0.000000008)0.863:0.023458476)0.000:0.000000007,((OTU_207:0.055606846,OTU_301:0.015698827)0.100:0.079549151,OTU_44:0.584787156)0.575:0.016144228)0.000:0.000000008)0.955:0.026176477,OTU_9:0.000000008)0.000:0.000000007);
{"type": "16S", "path_R2": "/tmp/RtmpBpSnD9/Masque_files_R2", "phredthres": 20, "annotationstrand": "both", "aFmax": 0.945, "aPmin": 0.75, "aSmin": 0.98, "aKmin": 0.75, "minreadlength": 50, "mail": "amine.ghozlane@pasteur.fr", "clusteringthreshold": 0.97, "aOmax": 0.865, "contaminant": "/tmp/RtmpBpSnD9/file69207712064_contaminant.fasta", "name": "file69207712064", "pattern_R1": "_L001_R1_001", "clusteringstrand": "both", "aCmin": 0.785, "minampliconlength": 50, "aPmax": 0.785, "dreptype": "--derep_prefix", "maxampliconlength": 0, "data_history_name": "data_shaman_2186_111", "minoverlap": 10, "aOmin": 0.82, "aGmin": 0.945, "path_R1": "/tmp/RtmpBpSnD9/Masque_files_R1", "aFmin": 0.865, "paired": true, "result_history_name": "shaman_2186_111", "mincorrect": 80, "minabundance": 4, "host": "hg38", "aGmax": 0.98, "aCmax": 0.82}
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Type Count Mean_length Median_length
Amplicon 1466288 521 525
Dereplication 904614 521 525
Singleton_removed 19871 520 525
Chimera_removed 15061 520 525
OTU 529 468 519
silva_annotation 490
greengenes_annotation 459
rdp_annotation 528
sample Raw_reads_fwd Raw_mean_length_fwd Raw_median_length_fwd Raw_reads_rev Raw_mean_length_rev Raw_median_length_rev Trimmed Trimmed_fwd Trimmed_rev Removed Removed_fwd Removed_rev Host_1_time Host_>1_time Phi_phage_1_time Phi_phage_>1_time Filtered_reads_fwd Filtered_mean_length_fwd Filtered_median_length_fwd Filtered_reads_rev Filtered_mean_length_rev Filtered_median_length_rev Combined pairs Uncombined pairs Selected_dereplication Selected_singleton Selected_chimera Selected_otu Mapped_reads Mapping_percent_combined
Delta-Compl4-52 382421 300 301 382421 300 301 560388 240191 320197 128103 69648 58455 1 4 202 0 279894 275 294 279894 212 216 51912 279894 32488 721 572 17 39182 14.0
Delta3-45 210885 300 300 210885 300 301 310452 131207 179245 65137 36026 29111 0 4 136 0 158397 277 295 158397 217 222 31791 158397 17784 456 340 12 25609 16.17
WT3-57 304309 300 301 304309 300 301 449904 197515 252389 100972 52291 48681 1 1 180 0 223500 276 294 223500 205 210 47544 223500 31547 653 465 28 34952 15.64
Delta-Compl5-71 79038 300 301 79038 300 301 114783 49047 65736 27381 14939 12442 0 1 55 0 57206 274 294 57206 212 216 13893 57206 9006 162 119 2 9630 16.83
Delta-m7 174333 300 301 174333 300 301 256037 109172 146865 56589 31135 25454 0 3 111 0 128746 274 294 128746 212 216 25343 128746 14571 348 305 25 21469 16.68
WT4-58 338059 300 301 338059 300 301 497875 214611 283264 111649 60346 51303 0 4 208 0 248283 274 294 248283 212 216 75138 248283 46778 1049 725 18 52820 21.27
Delta5-65 206406 300 301 206406 300 301 300394 125935 174459 66636 37242 29394 0 1 110 0 152836 276 295 152836 214 219 32464 152836 19250 468 347 10 24479 16.02
WT2-56 286047 300 301 286047 300 301 417406 176232 241174 94027 52040 41987 0 4 199 0 210367 274 294 210367 209 214 50835 210367 34541 641 495 25 36341 17.28
Delta-Compl-m13 411102 300 301 411102 300 301 593586 249525 344061 140111 77498 62613 0 6 252 0 298688 273 294 298688 211 216 52642 298688 32333 763 635 30 42022 14.07
WT2-38 149166 300 301 149166 300 301 217206 94928 122278 54791 29386 25405 0 2 86 0 105704 273 294 105704 208 213 24481 105704 16504 329 245 13 16957 16.04
WT4-40 168601 300 301 168601 300 301 254714 112403 142311 54100 29753 24347 0 2 106 0 124970 274 293 124970 218 223 32342 124970 19370 437 313 4 23847 19.08
WT5-41 204241 300 301 204241 300 301 299905 127886 172019 65883 36045 29838 0 5 131 0 151275 275 294 151275 213 217 33393 151275 21349 436 335 19 23720 15.68
WT5-59 110399 300 301 110399 300 301 161367 68585 92782 36879 20400 16479 0 2 67 0 80888 275 294 80888 211 215 18050 80888 11695 234 175 4 12663 15.65
WT3-39 426714 300 301 426714 300 301 646171 286374 359797 134714 72659 62055 0 5 273 0 317913 276 295 317913 217 222 66918 317913 42471 908 675 5 49513 15.57
Delta1-61 150685 300 301 150685 300 301 220462 94303 126159 49686 26619 23067 0 2 70 0 111206 275 293 111206 212 216 29193 111206 18580 353 248 8 19507 17.54
Delta-Compl-m17 293679 300 301 293679 300 301 423938 178372 245566 100063 55032 45031 2 4 175 0 213390 274 294 213390 211 215 48609 213390 29631 658 488 17 36785 17.24
Delta-Compl3-69 308175 300 301 308175 300 301 453279 194094 259185 101330 55759 45571 0 7 187 0 226863 275 294 226863 212 216 48981 226863 31543 672 485 19 34443 15.18
Delta-m8 357725 300 301 357725 300 301 517131 220008 297123 125402 68211 57191 0 3 180 0 257780 274 294 257780 209 214 58025 257780 36015 768 593 24 44004 17.07
Delta-Compl3-51 224372 300 301 224372 300 301 338692 149956 188736 71554 38352 33202 0 4 158 0 166502 276 294 166502 214 217 36884 166502 23754 469 377 5 28536 17.14
WT-m5 289245 300 301 289245 300 301 423686 182534 241152 98841 53785 45056 0 1 179 0 209669 273 293 209669 210 214 50982 209669 31365 709 534 23 37473 17.87
Delta-Compl5-53 237864 300 301 237864 300 301 345033 146824 198209 81600 44476 37124 0 1 133 0 172685 274 294 172685 211 216 43603 172685 25331 583 494 30 35855 20.76
Delta-Compl-m16 288015 300 301 288015 300 301 419243 181557 237686 103737 56050 47687 0 2 147 0 205432 272 292 205432 210 215 46850 205432 29332 618 467 13 32315 15.73
Delta3-63 222072 300 301 222072 300 301 326450 139590 186860 72059 39360 32699 0 3 135 0 164258 276 294 164258 212 216 35082 164258 21830 460 313 7 25479 15.51
Delta2-62 164442 300 301 164442 300 301 242339 102632 139707 51963 28810 23153 0 0 81 0 122402 275 294 122402 212 216 26257 122402 16825 363 268 7 18130 14.81
Delta-Compl-m15 418436 300 300 418436 300 301 609183 256037 353146 136278 75936 60342 0 3 255 0 308899 276 295 308899 215 220 60440 308899 35027 811 613 5 47082 15.24
Delta-Compl4-70 107928 300 301 107928 300 301 156568 67392 89176 39155 21383 17772 0 3 78 0 76922 273 294 76922 206 212 16613 76922 11364 174 140 10 11299 14.69
WT-m3 200504 300 301 200504 300 301 292608 125811 166797 69132 37775 31357 0 4 140 0 145400 274 293 145400 213 218 37222 145400 21117 573 433 13 28638 19.7
Delta-m9 387761 300 301 387761 300 301 565080 239350 325730 128635 71108 57527 0 2 253 0 284571 275 294 284571 215 220 58559 284571 32964 859 699 9 48851 17.17
WT-m4 230052 300 301 230052 300 301 335061 142590 192471 77842 42667 35175 0 3 140 0 167547 273 293 167547 213 217 40772 167547 23115 582 462 14 32119 19.17
Delta1-43 111119 300 301 111119 300 301 164940 71319 93621 34819 18704 16115 1 1 65 0 83251 277 295 83251 215 220 21736 83251 12491 317 253 7 17020 20.44
Delta5-47 105780 300 301 105780 300 301 157377 68178 89199 33588 18311 15277 0 4 65 0 78600 275 294 78600 213 216 20546 78600 12155 261 196 10 15873 20.19
WT-m2 242914 300 301 242914 300 301 361823 156379 205444 76300 41634 34666 0 3 160 0 181775 276 294 181775 217 222 50961 181775 30056 665 491 15 38556 21.21
Delta-Compl1-49 170821 300 301 170821 300 301 247551 105837 141714 59032 31731 27301 0 0 109 0 123723 274 294 123723 210 215 32198 123723 20453 429 322 22 23107 18.68
Delta-m11 531205 300 301 531205 300 301 776271 332807 443464 179648 97377 82271 3 7 342 0 387405 273 293 387405 210 214 79758 387405 52846 1013 749 32 54655 14.11
Delta-Compl1-67 161052 300 301 161052 300 301 233910 100272 133638 56175 30391 25784 0 1 116 0 116422 275 294 116422 210 214 28502 116422 17937 358 269 13 20844 17.9
Delta2-44 206706 300 301 206706 300 301 296977 128605 168372 76640 41011 35629 10 2 131 0 146356 273 294 146356 214 219 37769 146356 21196 571 421 14 28951 19.78
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{"type": "16S", "path_R2": "/tmp/Rtmp6ySBtN/Masque_files_R2", "phredthres": 0, "annotationstrand": "both", "aFmax": 0.945, "aPmin": 0.75, "aSmin": 0.98, "aKmin": 0.75, "minreadlength": 50, "mail": "amine.ghozlane@pasteur.fr", "clusteringthreshold": 0.97, "aOmax": 0.865, "contaminant": "/tmp/Rtmp6ySBtN/filea1a9748bebd0_contaminant.fasta", "name": "filea1a9748bebd0", "pattern_R1": "_L001_R1_001", "clusteringstrand": "both", "aCmin": 0.785, "minampliconlength": 50, "aPmax": 0.785, "dreptype": "--derep_prefix", "maxampliconlength": 0, "data_history_name": "data_shaman_2186_106", "minoverlap": 10, "aOmin": 0.82, "aGmin": 0.945, "path_R1": "/tmp/Rtmp6ySBtN/Masque_files_R1", "aFmin": 0.865, "paired": true, "result_history_name": "shaman_2186_106", "mincorrect": 50, "minabundance": 4, "host": "", "aGmax": 0.98, "aCmax": 0.82}
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OTU Kingdom Phylum Class Order Family Genus Specie
OTU_15 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_58 Bacteria Firmicutes Bacilli Bacillales Bacillaceae
OTU_36 Bacteria Cyanobacteria 4C0d-2 MLE1-12
OTU_45 Bacteria Cyanobacteria 4C0d-2 MLE1-12
OTU_14 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae
OTU_4 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_23 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_14 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae
OTU_12 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_20 Bacteria Proteobacteria Betaproteobacteria Burkholderiales Comamonadaceae
OTU_19 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_25 Bacteria Firmicutes
OTU_1 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_26 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_33 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_62 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_49 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae
OTU_44 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_60 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_13 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella enterica
OTU_55 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_21 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas
OTU_43 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24-7
OTU_25 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus aureus
OTU_6 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_41 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_42 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_70 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_59 Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae
OTU_60 Bacteria Firmicutes Bacilli Gemellales
OTU_67 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus
OTU_46 Bacteria Firmicutes Bacilli Bacillales Bacillaceae
OTU_65 Bacteria Fusobacteria Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia
OTU_44 Bacteria Bacteroidetes Bacteroidia Bacteroidales S24-7
OTU_18 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella
OTU_49 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_66 Bacteria Firmicutes Bacilli Lactobacillales
OTU_40 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_38 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus
OTU_2 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus aureus
OTU_19 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium acnes
OTU_37 Bacteria Firmicutes Bacilli Bacillales Bacillaceae
OTU_22 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_42 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_57 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella enterica
OTU_45 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus
OTU_11 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae
OTU_24 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium acnes
OTU_6 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_5 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella enterica
OTU_69 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus
OTU_43 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus
OTU_53 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus
OTU_3 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_38 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_34 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_47 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_8 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas
OTU_39 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus aureus
OTU_61 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus aureus
OTU_5 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella enterica
OTU_31 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Salmonella enterica
OTU_32 Bacteria Firmicutes Bacilli Bacillales Listeriaceae
OTU_61 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus
OTU_9 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_12 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_55 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_62 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae
OTU_26 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas
OTU_28 Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus
OTU_7 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus
OTU_54 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus
OTU_52 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus
(OTU_43:0.042884653,(OTU_4:0.000000007,OTU_46:0.009390584)0.912:0.017870958,(OTU_49:0.020821676,(OTU_47:0.022300505,((((OTU_66:0.000000007,(OTU_61:0.045356270,((OTU_69:0.000000007,OTU_60:0.039062501)0.731:0.000000007,(OTU_2:0.000000007,OTU_38:0.030038757)0.860:0.000000006)0.799:0.010322779)0.999:0.054793408)0.995:0.037939994,((OTU_40:0.036746419,(OTU_3:0.000000006,OTU_15:0.048600555)0.730:0.002422572)0.992:0.052006245,(((OTU_28:0.000000006,((((OTU_8:0.000000007,OTU_26:0.039668158)0.992:0.058171794,(((OTU_44:0.431891816,OTU_20:0.087273420)0.842:0.074934215,((OTU_45:0.225427475,OTU_24:0.213406872)0.972:0.107393644,(OTU_65:0.323090252,OTU_59:0.128938744)0.903:0.053503914)0.469:0.044803896)0.256:0.046064093,((OTU_5:0.000000007,OTU_18:0.046264531)0.974:0.058184509,(OTU_6:0.000000007,OTU_19:0.045890322)0.797:0.017831029)0.997:0.101410042)0.969:0.067883746)0.990:0.062039729,(OTU_14:0.000000007,(((OTU_62:0.001400378,(OTU_9:0.000000007,OTU_25:0.000000007)0.949:0.068063487)0.903:0.054124751,OTU_55:0.002770174)0.830:0.013064319,OTU_12:0.041163336)1.000:0.083967902)0.963:0.043561117)1.000:0.085639968,OTU_11:0.000000007)1.000:0.127315011)0.999:0.046124874,(OTU_1:0.000000007,OTU_42:0.042015878)0.765:0.000000006)0.971:0.037307077,OTU_70:0.015826282)1.000:0.099109147)0.308:0.013182076)0.921:0.019086489,(OTU_7:0.000000006,(OTU_52:0.018102916,OTU_53:0.020976946)0.985:0.024227705)0.903:0.015356962)0.924:0.026938270,OTU_67:0.000000006)0.993:0.029424143)0.900:0.011283368)0.872:0.013708432);
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Type Count Mean_length Median_length
Amplicon 5667037 429 427
Dereplication 2807991 429 427
Singleton_removed 41960 430 427
Chimera_removed 35606 430 427
OTU 70 353 424
silva_annotation 42
greengenes_annotation 41
rdp_annotation 69
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(OTU_43:0.043065538,(OTU_4:0.000000007,OTU_46:0.009499885)0.925:0.018605697,(OTU_49:0.020643917,(((OTU_40:0.036758939,(OTU_3:0.000000007,OTU_15:0.049180884)0.733:0.002875830)0.991:0.039579799,((OTU_66:0.017902335,(OTU_61:0.050068509,((OTU_69:0.000000007,OTU_60:0.039615642)0.000:0.000000007,(OTU_2:0.000000007,OTU_38:0.030429043)0.000:0.000000007)0.705:0.006231766)0.986:0.041162159)0.000:0.029462530,(((OTU_14:0.000000007,(((OTU_8:0.000000007,OTU_26:0.039942502)0.988:0.056796602,((OTU_20:0.146385742,((OTU_65:0.326111890,OTU_59:0.133033691)0.882:0.051081053,(OTU_44:0.414762963,(OTU_45:0.236062817,OTU_24:0.201453677)0.514:0.045175108)0.901:0.080591364)0.201:0.041178794)0.912:0.057034587,((OTU_5:0.000000006,OTU_18:0.046682783)0.975:0.058197730,(OTU_6:0.000000007,OTU_19:0.046385742)0.804:0.018453808)0.997:0.102953636)0.974:0.067491668)0.992:0.065261015,OTU_11:0.086703754)0.882:0.043661284)0.872:0.050119101,(_R_OTU_41:1.823998631,(((OTU_62:0.002081216,(OTU_9:0.000000007,OTU_25:0.000000007)0.950:0.068029812)0.971:0.053834779,OTU_55:0.003022945)0.646:0.006742090,OTU_12:0.047049095)0.000:0.021518168)0.557:0.021182743)1.000:0.177012761,(OTU_70:0.000000007,(OTU_28:0.046271013,(OTU_1:0.000000007,OTU_42:0.042679568)0.000:0.000000007)0.993:0.051799927)0.996:0.088730473)0.551:0.021344639)0.895:0.026850633)0.646:0.032331834,((OTU_67:0.000000007,(OTU_7:0.000000007,(OTU_52:0.018211514,OTU_53:0.021321050)0.987:0.024554344)1.000:0.041446735)0.995:0.030584891,OTU_47:0.022411077)0.000:0.000000007)0.873:0.011411699)0.848:0.014281058);
{"type": "16S", "phredthres": 20, "annotationstrand": "both", "aFmax": 0.945, "aPmin": 0.75, "aSmin": 0.98, "path": "/tmp/RtmpSP5L8X/Masque_files", "aCmin": 0.785, "minreadlength": 50, "mail": "amine.ghozlane@pasteur.fr", "clusteringthreshold": 0.97, "aOmax": 0.865, "host": "", "name": "fileeec74b27d162", "aPmax": 0.785, "clusteringstrand": "both", "minampliconlength": 50, "dreptype": "--derep_prefix", "maxampliconlength": 0, "data_history_name": "data_shaman_2186_78", "aOmin": 0.82, "aGmin": 0.945, "aKmin": 0.75, "aFmin": 0.865, "paired": false, "result_history_name": "shaman_2186_78", "mincorrect": 80, "minabundance": 4, "contaminant": "/tmp/RtmpSP5L8X/fileeec74b27d162_contaminant.fasta", "aGmax": 0.98, "aCmax": 0.82}
\ No newline at end of file
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Type Count Mean_length Median_length
Amplicon 197935 354 391
Dereplication 76839 357 390
Singleton_removed 4357 372 404
Chimera_removed 3539 367 403
OTU 290 325 404
silva_annotation 289
greengenes_annotation 289
rdp_annotation 286
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