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  • bia/icy/extensions/roi-statistics
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pom.xml
View file @ 406119cb
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>parent-pom-plugin</artifactId>
<version>1.0.6</version>
</parent>
<parent>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>pom-icy</artifactId>
<version>2.1.5</version>
</parent>
<artifactId>roi-statistics</artifactId>
<version>5.11.1</version>
<artifactId>roi-statistics</artifactId>
<version>5.11.1</version>
<name>ROI Statistics</name>
<description>
<name>ROI Statistics</name>
<description>
This tool compute measures on the ROIs of the chosen sequence, updates the measures live when ROIs are changed and allows to copy/paste the measures to 3rd-party sheet edition softwares.
Measures include geometric (bounding box) and intensity information.
</description>
<dependencies>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>vecmath</artifactId>
<version>1.6.1</version>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>active-contours</artifactId>
<version>${active-contours.version}</version>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>convexify</artifactId>
<version>${convexify.version}</version>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>sequence-blocks</artifactId>
<version>${sequence-blocks.version}</version>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>spot-tracking</artifactId>
<version>${spot-tracking.version}</version>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>workbooks</artifactId>
<version>${workbooks.version}</version>
</dependency>
</dependencies>
<dependencies>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>icy-kernel</artifactId>
<version>2.4.4</version>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>vecmath</artifactId>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>active-contours</artifactId>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>convexify</artifactId>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>sequence-blocks</artifactId>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>spot-tracking</artifactId>
</dependency>
<dependency>
<groupId>org.bioimageanalysis.icy</groupId>
<artifactId>workbooks</artifactId>
</dependency>
</dependencies>
<repositories>
<repository>
<id>icy</id>
<url>https://icy-nexus.pasteur.fr/repository/Icy/</url>
</repository>
</repositories>
<repositories>
<repository>
<id>icy</id>
<url>https://icy-nexus.pasteur.fr/repository/Icy/</url>
</repository>
</repositories>
</project>
\ No newline at end of file
src/main/java/plugins/adufour/roi/ROIEllipsoidFittingDescriptor.java
View file @ 406119cb
......@@ -318,6 +318,24 @@ public class ROIEllipsoidFittingDescriptor extends Plugin implements PluginROIDe
return "\u00B0";
}
@Override
public Object getNullValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMinValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMaxValue()
{
return Double.valueOf(180d);
}
@Override
public Object compute(ROI roi, Sequence sequence) throws UnsupportedOperationException, InterruptedException
{
......@@ -377,6 +395,24 @@ public class ROIEllipsoidFittingDescriptor extends Plugin implements PluginROIDe
return "\u00B0";
}
@Override
public Object getNullValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMinValue()
{
return Double.valueOf(-180d);
}
@Override
public Object getMaxValue()
{
return Double.valueOf(180d);
}
@Override
public Object compute(ROI roi, Sequence sequence) throws UnsupportedOperationException, InterruptedException
{
......@@ -439,6 +475,24 @@ public class ROIEllipsoidFittingDescriptor extends Plugin implements PluginROIDe
return "\u00B0";
}
@Override
public Object getNullValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMinValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMaxValue()
{
return Double.valueOf(180d);
}
@Override
public Object compute(ROI roi, Sequence sequence) throws UnsupportedOperationException, InterruptedException
{
......
src/main/java/plugins/adufour/roi/ROIHaralickTextureDescriptor.java
View file @ 406119cb
......@@ -61,6 +61,24 @@ public class ROIHaralickTextureDescriptor extends Plugin implements PluginROIDes
return true;
}
@Override
public Object getNullValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMinValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMaxValue()
{
return Double.valueOf(1d);
}
@Override
public Object compute(ROI roi, Sequence sequence) throws UnsupportedOperationException, InterruptedException
{
......@@ -164,6 +182,24 @@ public class ROIHaralickTextureDescriptor extends Plugin implements PluginROIDes
return true;
}
@Override
public Object getNullValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMinValue()
{
return Double.valueOf(0d);
}
@Override
public Object getMaxValue()
{
return Double.valueOf(1d);
}
@Override
public Object compute(ROI roi, Sequence sequence) throws UnsupportedOperationException, InterruptedException
{
......@@ -216,8 +252,7 @@ public class ROIHaralickTextureDescriptor extends Plugin implements PluginROIDes
* (see {@link #getDescriptors()}) for a full list
* @throws InterruptedException
*/
public static Map<ROIDescriptor, Object> computeHaralickFeatures(Sequence sequence, ROI2D roi, int step)
throws InterruptedException
public static Map<ROIDescriptor, Object> computeHaralickFeatures(Sequence sequence, ROI2D roi, int step) throws InterruptedException
{
int c = roi.getC();
if (c == -1)
......