Resolve "Refactor phenotype category"

Closes #116 (closed)

• migrate phenotype_categories within Analysis and Experiment models to Phenotype instead of PhenotypeCategory

added enhancement label

assigned to @rplanel

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• be27171d - Update models and data migrations in order to be have a column name in...

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• 46748e8e - Update models and migrations

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• 2f2c4d38 - Remove migrations operations manually

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added 2 commits

• 88dd641f - add phenotype classmethod that get primitive choice depending on python primitive type
• 5def7ecc - return primitive values

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• 26d2d34b - Update addExperimentPhenotype to match new db model
• bb8eef4b - Deactivate phenotype category validation when submitting experiment

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• 1ce791f9 - Update method parseDatatype in order to handle primitive db model choices

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• Try to cast on the backend phenotype values (https://gitlab.pasteur.fr/cc-qtl/cc-qtl-db/-/blob/refactor-phenotype-category-116/server/api/models.py#L338)

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• 01d75c66 - make serializer cast on the fly phenotype values
• 8ce627cf - Make the experimentCclineSerializer return an object that represent mother...

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• 606df63f - Remove unused functions

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• 48c43604 - request experiment cclines instead of phenotypes action

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• 8dbd682f - Remove comments

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resolved all threads

Cannot submit analysis anymore with the current refactor

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• 1b39d193 - Rename phenotype to phenotypeValue

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changed the description

added 117 commits

• 1b39d193...0101046c - 107 earlier commits
• 4334cd1b - Remove PORT test for server service
• 909f842a - Merge branch 'to-final-gitlab-orga' into introduce-phenotype-value
• 569f65ce - remove cc-qtl-tools volume
• 81133d4e - Update .env.sample
• 167821f2 - How to create api key
• 015d47c5 - update cc-qtl wf
• 04d9099f - Update readme
• 19cfc0da - Update installation steps
• 930a98ab - set file_path and shed_tool_path
• 28966ad6 - Merge branch 'introduce-phenotype-value' into 'refactor-phenotype-category-116'

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added 1 commit

• 9ae0b8cf - update welcome page

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added 31 commits

• 9ae0b8cf...187ae319 - 21 earlier commits
• 7b7b4d45 - Update docs/img/ParamCalcGenoprobs.png, docs/img/ParamFormatData.png,...
• 74cfc216 - readme add pics for QTL param
• 82045419 - Add TestData.csv
• 3793cec1 - Update docs/img/RunAnalysis2.png, docs/img/RunAnalysis1.png
• c3e0530d - update readme analysis workflow and a bit more
• 66409681 - quick readme update
• 65d61bc7 - update readme
• 3ac395f0 - Update docs/img/PlotTopSNPs.png, docs/img/PlotHaplotypes.png,...
• 1575c448 - update readme, tinkered but done VB side
• 647df548 - Merge branch 'to-final-gitlab-orga' into refactor-phenotype-category-116

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marked this merge request as ready

merged

mentioned in commit 6e85b416