Explore projects

Singularity to wrap minimap2 and miniasm in order to perform a long read de novo assembly

Pipeline to run CMS in large-scale analyses

Project Testing for the Core-Genome EPA scripts Checking for problems with dependencies, code bugs, and other problems that might have been unseen

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

MetroloSPIM plugin for Icy

Fast Fourier Transform Plugin for Icy

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

The impact of genetic diversity on gene essentiality within the E. coli species

Pipeline to run CMS in large-scale analyses

Share a5 modeling steps for TAC meeting

You can find here the HMM profiles and the macsyfinder models that was used in the paper Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility.

A wrapper for the canu long read assembly tool