Course material for the part about R and RStudio of the PhD course.

Individual-based model of P. vivax transmission

Script to pre-process GWAS inputs

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Surf feature matching

A plugin originally developed by Alexandre Dufour and adapted by Daniel Gonzalez

SLIC: Simple Linear Iterative Clustering

An Icy plugin implementing this popular segmentation technique

Trying to deconvolve single tag assignment for multiple molecules

Training about sequence Bioinformatics

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium