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Shiny app for the analysis of single cell data

Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data

Modeling ricochet robot in OCaml

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Some scripts to plot results from my HTS pipelines.

Some experiments with parallel and functional programming.

Defining small RNAs in C. elegans.

Miscellaneous stuff to deal with Ribo-seq data.

Utilities to make stats and plots from reads.

Some helpers for HTS data analyses.

Some helpers to call DESeq2 using rpy2 in python.

Utilities to make a consensus from a sequence alignment.

Utilities to cluster sequences.

Miscellaneous python things to deal with bam files

Small Haskell utility that extracts an attribute from gtf data.

Utilities to collapse reads in bam files to their 5' end