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Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning

Creates convex versions of regions of interests in 2D or 3D using the QuickHull library.

Cropping reads to reach homogeneous composition among positions

A tool to parse the javadoc of a file. Mostly used now by the Script Editor.

Extracts labeled objects from a binary or labeled image into ROI using connected component analysis

This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

A toolbox to chain image analysis processes

A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

My own toolbox used for all the plugins I developed.

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

Rhino Library for Icy

A simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.

Blast approach is aimed to annotate a metagenomic sequencing using an approach mostly based on blast.

Django Data Import Utilities

Share a5 modeling steps for TAC meeting