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Import Matlab *.mat files as sequences in Icy

Display the colormap over the image using an overlay.

An Icy plugin made for random generation of crops on a given sequence

A open-source utility library for linear programming in Java with the simplex algorithm.

coverage profile from read alignments

Cropping reads to reach homogeneous composition among positions

building prefix tree from LIN codes

Icy plugin for applying median filter on 2D and 3D sequences

Building a supermatrix of characters from a set of multiple sequence alignments

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp

Multiple Sequence Alignment shrinking

Fast removal of contaminating reads from FASTQ file(s)

The Oshi core library (JDK6) for Icy

https://github.com/oshi/oshi