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IdA Public / Zellige-core
BSD 2-Clause "Simplified" LicenseUpdated -
Icy is an open community platform for bioimage informatics
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Bioimage Analysis / TensorFlow Manager
GNU General Public License v3.0 onlyThe TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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Bioimage Analysis / Icy / Extensions / Spot Detector
GNU General Public License v3.0 onlySpot detector plugin for Icy
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Bioimage Analysis / Icy / Extensions / HK-Means
GNU General Public License v3.0 onlyHK-Means plugin for Icy
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Bioimage Analysis / Icy / Extensions / Track Manager
GNU General Public License v3.0 onlyTrack Manager plugin for Icy
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Bioimage Analysis / Icy / Extensions / Active Contours
GNU General Public License v3.0 onlyActive Contours plugin for Icy
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Bioimage Analysis / Icy / Extensions / Workbooks
GNU General Public License v3.0 onlyToolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software
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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
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Bioimage Analysis / Plugin template
GNU General Public License v3.0 onlyTemplate to create new Icy plugin (POM file and base plugin class)
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GIPhy / HCAP
GNU Affero General Public License v3.0Cropping reads to reach homogeneous composition among positions
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Bioimage Analysis / Mask Editor
GNU General Public License v3.0 onlyThis plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.
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Bioimage Analysis / NHerve Image Analysis
GNU General Public License v3.0 onlyA toolbox to chain image analysis processes
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Bioimage Analysis / NHerve Matrix
GNU General Public License v3.0 onlyA patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/
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Bioimage Analysis / NHerve Toolbox
GNU General Public License v3.0 onlyMy own toolbox used for all the plugins I developed.
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Bioimage Analysis / Rigid Registration
GNU General Public License v3.0 onlyA simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.
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Bioimage Analysis / ROI intensity evolution
GNU General Public License v3.0 onlyCompute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed automatically as ROIs are changed.
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Bioimage Analysis / Texture segmentation
GNU General Public License v3.0 onlyIt is a toy plugin to test semi-supervised texture segmentation using the new SLBPriu texture descriptor.
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Icy wrapper for the Apache Commons CSV library.
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