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Icy is an open community platform for bioimage informatics

description

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

Spot detector plugin for Icy

HK-Means plugin for Icy

Track Manager plugin for Icy

Active Contours plugin for Icy

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Template to create new Icy plugin (POM file and base plugin class)

Cropping reads to reach homogeneous composition among positions

This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

A toolbox to chain image analysis processes

A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

My own toolbox used for all the plugins I developed.

A simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.

Compute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed automatically as ROIs are changed.

It is a toy plugin to test semi-supervised texture segmentation using the new SLBPriu texture descriptor.

Icy wrapper for the Apache Commons CSV library.