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Parameter inference using filtered linear noise approximation algorithm for likelihood calculation.

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...

Cytoscape.js visualisation of PASTML trees

From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM

This will contain the minimal necessary codes to reproduce the image analysis (BF and IF) from the preprint https://arxiv.org/abs/2303.17522

Python GUI to control an AOTF.

Converting Genbank files into EMBL-like files suitable for submission to ENA