Explore projects

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Multiple Sequence Alignment shrinking

Defining small RNAs in C. elegans.

mini-contig de novo assembly from long-read data

Fiji plugin to register 3D movies and tracks of cells moving on fiber imaged in transmitted light.

Data intensive science for everyone.

coGSEA with the SetRank Method

building forests of near-ML trees

Code repository for the paper "An algorithm to build synthetic temporal contact networks based on close-proximity interactions data"

docker image to build tensorflow on CentOS-6 x86_64

imglib2-icy ImgLib2 wrappers for Icy.