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You can find here the HMM profiles and the macsyfinder models that was used in the paper Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility.

Shiny version of coGSEA

Indexing of trx.mat files into SQLite DB

Data and script for the paper on ICE vs CP

Python code for the image analysis performed for the paper

"Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.

This project serves as a repository for the code necessary for Pinon et al. 2025 paper.

building prefix tree from LIN codes

Share a5 modeling steps for TAC meeting