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Miscellaneous python things to deal with bam files

Django based project to build metagenomics genes catalog

MsgPack Core library for Icy.

https://msgpack.org/

A cookie cutter for the genetic statistics unit

Interface between MaggotUBA and the Nyx tagging UI

building an centos7 docker image for CI

SDK for 3D ROI creation and manipulation using polygonal (surface) and polyhedral (volume) meshes.

Plugin Library used to provide autocompletion to JTextComponents, such as JTextArea or JTextField.

Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning

This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi

Creates convex versions of regions of interests in 2D or 3D using the QuickHull library.

Cropping reads to reach homogeneous composition among positions

Extracts labeled objects from a binary or labeled image into ROI using connected component analysis