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Pipeline to run CMS in large-scale analyses

Share a5 modeling steps for TAC meeting

You can find here the HMM profiles and the macsyfinder models that was used in the paper Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility.

A wrapper for the canu long read assembly tool

Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial

Convert nd2 to zarr

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp