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Bioimage Analysis / NHerve Matrix
GNU General Public License v3.0 onlyA patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/
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GIPhy / HCAP
GNU Affero General Public License v3.0Cropping reads to reach homogeneous composition among positions
Topics: fastqUpdated -
GIPhy / MSAshrink
GNU Affero General Public License v3.0Multiple Sequence Alignment shrinking
Topics: javaUpdated -
GIPhy / eFASTA
GNU Affero General Public License v3.0Extracting a nucleotide segment from a FASTA-formatted file
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GIPhy / DNA2ORF
GNU Affero General Public License v3.0Translating the maximum number of codons using the minimum number of ORFs
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GIPhy / Concatenate
GNU Affero General Public License v3.0Building a supermatrix of characters from a set of multiple sequence alignments
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GIPhy / C2A.A2C
GNU Affero General Public License v3.0Translating and back-translating codon and amino-acid sequence files
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Bioimage Analysis / GraalJS for Icy
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Apache XMLBeans
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Color Bar
GNU General Public License v3.0 onlyDisplay the colormap over the image using an overlay.
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GIPhy / AlienTrimmer
GNU Affero General Public License v3.0Fast trimming of sequencing reads
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GIPhy / AlienRemover
GNU Affero General Public License v3.0Fast removal of contaminating reads from FASTQ file(s)
Topics: fastqUpdated -
GIPhy / RepeatPlot
GNU Affero General Public License v3.0creating figures that represent the positions of long repeats in a chromosome
Topics: fastaUpdated -
GIPhy / AlienDiscover
GNU Affero General Public License v3.0Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file
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GIPhy / MSTclust
GNU Affero General Public License v3.0Minimum Spanning Tree-based clustering
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Bioimage Analysis / Clipper
GNU General Public License v3.0 onlyClipper - A polygon clipping library
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Bioimage Analysis / Channel Montage
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Big Image Tools
MIT LicenseBig Image Tools - Read and write large 2D images with Icy
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Bioimage Analysis / Icy BUnwarp
MIT LicenseB-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ
Updated