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This will contain the minimal necessary codes to reproduce the image analysis (BF and IF) from the preprint https://arxiv.org/abs/2303.17522

compress nd2 files

https://github.com/dialvarezs/alphafold

From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM

import from github

Scripts to inject attc cassette in genome for Integron_Finder analysis

The impact of genetic diversity on gene essentiality within the E. coli species

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)