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Python code for the image analysis performed for the paper

"Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.

Process the droplet chips using snakemake pipelines.

Webapp pour l'analyse de trajectoires

Extracting CDS from contig sequences

This will contain the minimal necessary codes to reproduce the image analysis (BF and IF) from the preprint https://arxiv.org/abs/2303.17522