GitLab

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

Utilities to collapse reads in bam files to their 5' end

This package contains deep learning models and related scripts for RoseTTAFold

Parameter inference using filtered linear noise approximation algorithm for likelihood calculation.

This repo contains the script, model and parameters needed to train a StarDist model on the simulated dataset used in the ISBI Grand Challenge on Single-Particle Tracking.

Recent analyses on Stephanie's data

Downloading genome assembly files from GenBank or RefSeq

Script to pre-process GWAS inputs

Extracting CDS from contig sequences