Blocks (Protocols) for Micro-Manager plugin

Icy wrapper for the Apache Commons CSV library.

HUB transcriptomic snakemake pipeline

Region segmentation

Dockerized plug and play SAML 2.0 Identity Provider (IdP) for development and testing.

The Oshi core library (JDK6) for Icy

https://github.com/oshi/oshi

Export sequences from Icy to Matlab *.mat files

Compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV

Code and data for the article by Paireau et al. "An ensemble model based on early predictors to forecast COVID-19 healthcare demand in France"

Low-level functions for interactive communication between Icy and Matlab.