Tags

release: v8.4: Bugs fixed in clone_assignment and get_tree with a new output file created non_clone_assigned_sequence.tsv & Bugs fixed in tree_vizu when no metadata

release v8.3: Bug fixed in tree_vizu: now nb of removed seq are displayed again, Now annotated seq are colored

release v8.2:Bug fixed in tree_vizu: now meta are displayed again

release v8.1:Bug fixed in get_tree

release v8.0: xlsx2fasta.R file modified so that fasta files have correct names, now trees.pdf return an empty graph (but with infos) for clonal groups without trees

release v7.1: Clean version of the xlsx2fasta.R script: can now be run on any excel file

release v6.11: Code debbuged. tree_seq_not_displayed.tsv remains to be debugged

release v6.10: Repertoires improved

release v6.9: Repertoires added

release v6.8: igblast_aa parameter not operational yet + tree_vizu process not sensitive to cache

release v6.7: Problem of cache fixed for distance_hist process and bug fixed for empty pdf plot in this process

release v6.6: Names of metadata now systematically present in trees, even when identical sequences are removed, and bug fixed for empty pdf plot

release v6.5: Code secured and bug fixed for NULL metadata file path

release v6.3: AA sequences added. Translation of the alignment_sequence column is added in the returned productive_seq.tsv and new aa.tsv file

release v6.2: Supp donut added regarding clonal gourps with functional annotation

release v6.1: New parameters for the donut

release v6.0: Distance histogram added,Empty graphs added,New parameters for the donut

release v5.1: Metadata info added in donut plot

release v5.0: Bug solved when the tree_meta_path_names parameter is a categorical column, New tree_meta_name_replacement parameter

release v4.4: Bug solved in seq_not_displayed.tsv file