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content/3.defense-systems/menshen.md
View file @ f741a518
......@@ -47,32 +47,24 @@ The system was detected in 263 different species.
Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Menshen
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /menshen/Menshen,Menshen__NsnA,0,V-plddts_87.39628.pdb
---
::
dataUrls:
- /menshen/Menshen.Menshen__NsnA.0.V.cif
- /menshen/Menshen.Menshen__NsnB.0.V.cif
- /menshen/Menshen.Menshen__NsnC.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /menshen/Menshen,Menshen__NsnB,0,V-plddts_89.66947.pdb
---
::
::molstar-pdbe-plugin
---
height: 700
dataUrl: /menshen/Menshen,Menshen__NsnC,0,V-plddts_91.07244.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_0
......@@ -107,3 +99,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/mmb_gp29_gp30.md
View file @ f741a518
......@@ -41,25 +41,23 @@ The system was detected in 4 different species.
Proportion of genome encoding the MMB_gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### MMB_gp29_gp30
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mmb_gp29_gp30/MMB_gp29_gp30__gp29-plddts_82.71079.pdb
---
::
dataUrls:
- /mmb_gp29_gp30/MMB_gp29_gp30__gp29.cif
- /mmb_gp29_gp30/MMB_gp29_gp30__gp30.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mmb_gp29_gp30/MMB_gp29_gp30__gp30-plddts_65.6043.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Dedrick_2017[<a href='https://doi.org/10.1038/nmicrobiol.2016.251'>Dedrick et al., 2017</a>] --> Origin_0
......@@ -85,3 +83,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/mok_hok_sok.md
View file @ f741a518
......@@ -51,18 +51,22 @@ The system was detected in 83 different species.
Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Mok_Hok_Sok
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mok_hok_sok/Mok_Hok_Sok__Hok-plddts_80.98652.pdb
dataUrls:
- /mok_hok_sok/Mok_Hok_Sok__Hok.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Pecota_1996[<a href='https://doi.org/10.1128/jb.178.7.2044-2050.1996'>Pecota and Wood, 1996</a>] --> Origin_0
......@@ -87,3 +91,4 @@ end
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/mokosh.md
View file @ f741a518
......@@ -66,50 +66,43 @@ The system was detected in 577 different species.
Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Mokosh_TypeI
##### Example 1
Example 1:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoA,0,V-plddts_81.37154.pdb
---
::
dataUrls:
- /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoB,0,V-plddts_91.10094.pdb
---
::
##### Example 2
Example 2:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoA,0,V-plddts_81.37154.pdb
---
::
dataUrls:
- /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoB,0,V-plddts_91.10094.pdb
---
::
### Mokosh_TypeII
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /mokosh/Mokosh_TypeII__MkoC-plddts_90.69139.pdb
dataUrls:
- /mokosh/Mokosh_TypeII__MkoC.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_0
......@@ -157,3 +150,4 @@ end
</mermaid>
content/3.defense-systems/nhi.md
View file @ f741a518
......@@ -48,18 +48,22 @@ The system was detected in 61 different species.
Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Nhi
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /nhi/Nhi__Nhi-plddts_83.89425.pdb
dataUrls:
- /nhi/Nhi__Nhi.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_0
......@@ -123,3 +127,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/nixi.md
View file @ f741a518
......@@ -43,18 +43,22 @@ The system was detected in 5 different species.
Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### NixI
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /nixi/NixI__NixI-plddts_92.38782.pdb
dataUrls:
- /nixi/NixI__NixI.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Legault_2022[<a href='https://doi.org/10.1093/nar/gkac002'>LeGault et al., 2022</a>] --> Origin_0
......@@ -78,3 +82,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/nlr.md
View file @ f741a518
......@@ -10,6 +10,8 @@ tableColumns:
Activator: Unknown
Effector: Unknown
PFAM: PF05729
relevantAbstracts:
- doi: 10.1101/2022.07.19.500537
---
# NLR
......@@ -38,27 +40,33 @@ The system was detected in 205 different species.
Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### NLR_like_bNACHT01
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01-plddts_87.90581.pdb
dataUrls:
- /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01.cif
---
::
### NLR_like_bNACHT09
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09-plddts_85.63627.pdb
dataUrls:
- /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Kibby_2022[<a href='https://doi.org/10.1101/2022.07.19.500537'>Kibby et al., 2022</a>] --> Origin_0
......@@ -170,13 +178,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1101/2022.07.19.500537
---
::
content/3.defense-systems/old_exonuclease.md
View file @ f741a518
......@@ -46,18 +46,22 @@ The system was detected in 56 different species.
Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Old_exonuclease
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /old_exonuclease/Old_exonuclease__Old_exonuclease-plddts_88.62156.pdb
dataUrls:
- /old_exonuclease/Old_exonuclease__Old_exonuclease.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Rousset_2022[<a href='https://doi.org/10.1016/j.chom.2022.02.018'>Rousset et al., 2022</a>] --> Origin_0
......@@ -84,3 +88,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/olokun.md
View file @ f741a518
......@@ -52,25 +52,23 @@ The system was detected in 137 different species.
Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Olokun
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /olokun/Olokun,Olokun__OloA,0,V-plddts_89.84697.pdb
---
::
dataUrls:
- /olokun/Olokun.Olokun__OloA.0.V.cif
- /olokun/Olokun.Olokun__OloB.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /olokun/Olokun,Olokun__OloB,0,V-plddts_85.67714.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_0
......@@ -95,3 +93,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/pago.md
View file @ f741a518
......@@ -99,80 +99,30 @@ The system was detected in 464 different species.
Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### pAgo
##### Example 1
Example 1:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb
---
::
Example 2:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb
---
::
Example 3:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb
---
::
dataUrls:
- /pago/pAgo__pAgo_LongA.cif
- /pago/pAgo__pAgo_LongB.cif
- /pago/pAgo__pAgo_S1A.cif
- /pago/pAgo__SIR2APAZ.cif
- /pago/pAgo__pAgo_S1B.cif
- /pago/pAgo__XAPAZ.cif
- /pago/pAgo__pAgo_S2B.cif
- /pago/pAgo__TIRAPAZ.cif
- /pago/pAgo__pAgo_SPARTA.cif
Example 4:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb
---
::
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongB-plddts_92.47739.pdb
---
::
Example 5:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb
---
::
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongB-plddts_92.47739.pdb
---
::
Example 6:
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb
---
::
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pago/pAgo__pAgo_LongB-plddts_92.47739.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Kuzmenko_2020[<a href='https://doi.org/10.1038/s41586-020-2605-1'>Kuzmenko et al., 2020</a>] --> Origin_0
......@@ -270,3 +220,4 @@ end
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/panchino_gp28.md
View file @ f741a518
......@@ -7,6 +7,8 @@ tableColumns:
abstract: |
Temperate phages are common, and prophages are abundant residents of sequenced bacterial genomes. Mycobacteriophages are viruses that infect mycobacterial hosts including Mycobacterium tuberculosis and Mycobacterium smegmatis, encompass substantial genetic diversity and are commonly temperate. Characterization of ten Cluster N temperate mycobacteriophages revealed at least five distinct prophage-expressed viral defence systems that interfere with the infection of lytic and temperate phages that are either closely related (homotypic defence) or unrelated (heterotypic defence) to the prophage. Target specificity is unpredictable, ranging from a single target phage to one-third of those tested. The defence systems include a single-subunit restriction system, a heterotypic exclusion system and a predicted (p)ppGpp synthetase, which blocks lytic phage growth, promotes bacterial survival and enables efficient lysogeny. The predicted (p)ppGpp synthetase coded by the Phrann prophage defends against phage Tweety infection, but Tweety codes for a tetrapeptide repeat protein, gp54, which acts as a highly effective counter-defence system. Prophage-mediated viral defence offers an efficient mechanism for bacterial success in host-virus dynamics, and counter-defence promotes phage co-evolution.
PFAM: PF01170, PF02384, PF13588
relevantAbstracts:
- doi: 10.1038/nmicrobiol.2016.251
---
# Panchino_gp28
......@@ -34,18 +36,22 @@ The system was detected in 5 different species.
Proportion of genome encoding the Panchino_gp28 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### Panchino_gp28
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /panchino_gp28/Panchino_gp28__gp28-plddts_90.80762.pdb
dataUrls:
- /panchino_gp28/Panchino_gp28__gp28.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Dedrick_2017[<a href='https://doi.org/10.1038/nmicrobiol.2016.251'>Dedrick et al., 2017</a>] --> Origin_0
......@@ -73,12 +79,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstract
::relevant-abstracts
---
items:
- doi: 10.1038/nmicrobiol.2016.251
---
::
content/3.defense-systems/paris.md
View file @ f741a518
......@@ -9,6 +9,8 @@ tableColumns:
Sensor: Sensing of phage protein
Activator: Unknown
Effector: Unknown
relevantAbstracts:
- doi: 10.1016/j.chom.2022.02.018
---
# Paris
......@@ -45,59 +47,57 @@ The system was detected in 518 different species.
Proportion of genome encoding the Paris system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PARIS_I
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /paris/PARIS_I,PARIS_I__AAA_15,0,V-plddts_82.06453.pdb
---
::
dataUrls:
- /paris/PARIS_I.PARIS_I__AAA_15.0.V.cif
- /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /paris/PARIS_I,Rst_PARIS__DUF4435,0,V-plddts_91.32921.pdb
---
::
### PARIS_II
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /paris/PARIS_II,PARIS_II__AAA_21,0,V-plddts_81.78189.pdb
---
::
dataUrls:
- /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
- /paris/PARIS_II.PARIS_II__AAA_21.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /paris/PARIS_II,Rst_PARIS__DUF4435,0,V-plddts_95.50028.pdb
---
::
### PARIS_II_merge
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /paris/PARIS_II_merge__AAA_21_DUF4435-plddts_93.06529.pdb
dataUrls:
- /paris/PARIS_II_merge__AAA_21_DUF4435.cif
---
::
### PARIS_I_merge
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /paris/PARIS_I_merge__AAA_15_DUF4435-plddts_85.1867.pdb
dataUrls:
- /paris/PARIS_I_merge__AAA_15_DUF4435.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Rousset_2022[<a href='https://doi.org/10.1016/j.chom.2022.02.018'>Rousset et al., 2022</a>] --> Origin_0
......@@ -139,13 +139,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1016/j.chom.2022.02.018
---
::
content/3.defense-systems/pd-lambda-1.md
View file @ f741a518
......@@ -48,18 +48,22 @@ The system was detected in 483 different species.
Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-Lambda-1
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-1/PD-Lambda-1__PD-Lambda-1-plddts_85.64965.pdb
dataUrls:
- /pd-lambda-1/PD-Lambda-1__PD-Lambda-1.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -85,3 +89,4 @@ end
</mermaid>
content/3.defense-systems/pd-lambda-2.md
View file @ f741a518
......@@ -10,6 +10,8 @@ tableColumns:
Activator: Unknown
Effector: Unknown
PFAM: PF06114, PF09907, PF14350
relevantAbstracts:
- doi: 10.1038/s41564-022-01219-4
---
# PD-Lambda-2
......@@ -34,32 +36,24 @@ The system was detected in 59 different species.
Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-Lambda-2
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-2/PD-Lambda-2,PD-Lambda-2__PD-Lambda-2_A,0,V-plddts_84.87041.pdb
---
::
dataUrls:
- /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_C.0.V.cif
- /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_B.0.V.cif
- /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_A.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-2/PD-Lambda-2,PD-Lambda-2__PD-Lambda-2_B,0,V-plddts_82.06596.pdb
---
::
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-2/PD-Lambda-2,PD-Lambda-2__PD-Lambda-2_C,0,V-plddts_94.25495.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -88,13 +82,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1038/s41564-022-01219-4
---
::
content/3.defense-systems/pd-lambda-3.md
View file @ f741a518
......@@ -45,32 +45,24 @@ The system was detected in 28 different species.
Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-Lambda-3
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-3/PD-Lambda-3,PD-Lambda-3__PD-Lambda-3_A,0,V-plddts_93.15726.pdb
---
::
dataUrls:
- /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_A.0.V.cif
- /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_B.0.V.cif
- /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_C.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-3/PD-Lambda-3,PD-Lambda-3__PD-Lambda-3_B,0,V-plddts_92.44549.pdb
---
::
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-3/PD-Lambda-3,PD-Lambda-3__PD-Lambda-3_C,0,V-plddts_92.92218.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -96,3 +88,4 @@ end
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/pd-lambda-4.md
View file @ f741a518
......@@ -9,6 +9,8 @@ tableColumns:
Sensor: Unknown
Activator: Unknown
Effector: Unknown
relevantAbstracts:
- doi: 10.1038/s41564-022-01219-4
---
# PD-Lambda-4
......@@ -33,25 +35,23 @@ The system was detected in 14 different species.
Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-Lambda-4
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-4/PD-Lambda-4,PD-Lambda-4__PD-Lambda-4_A,0,V-plddts_84.51259.pdb
---
::
dataUrls:
- /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_B.0.V.cif
- /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_A.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-4/PD-Lambda-4,PD-Lambda-4__PD-Lambda-4_B,0,V-plddts_81.06371.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -78,12 +78,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1038/s41564-022-01219-4
---
::
content/3.defense-systems/pd-lambda-5.md
View file @ f741a518
......@@ -44,25 +44,23 @@ The system was detected in 186 different species.
Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-Lambda-5
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-5/PD-Lambda-5,PD-Lambda-5__PD-Lambda-5_A,0,V-plddts_83.30421.pdb
---
::
dataUrls:
- /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_A.0.V.cif
- /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_B.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-5/PD-Lambda-5,PD-Lambda-5__PD-Lambda-5_B,0,V-plddts_90.05221.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -94,3 +92,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
content/3.defense-systems/pd-lambda-6.md
View file @ f741a518
......@@ -9,6 +9,8 @@ tableColumns:
Sensor: Unknown
Activator: Unknown
Effector: Unknown
relevantAbstracts:
- doi: 10.1038/s41564-022-01219-4
---
# PD-Lambda-6
......@@ -33,18 +35,22 @@ The system was detected in 11 different species.
Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-Lambda-6
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-lambda-6/PD-Lambda-6__PD-Lambda-6-plddts_89.62781.pdb
dataUrls:
- /pd-lambda-6/PD-Lambda-6__PD-Lambda-6.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -69,12 +75,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1038/s41564-022-01219-4
---
::
content/3.defense-systems/pd-t4-1.md
View file @ f741a518
......@@ -10,6 +10,8 @@ tableColumns:
Activator: Unknown
Effector: Unknown
PFAM: PF13020
relevantAbstracts:
- doi: 10.1371/journal.pgen.1010065
---
# PD-T4-1
......@@ -34,18 +36,22 @@ The system was detected in 38 different species.
Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-T4-1
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-t4-1/PD-T4-1__PD-T4-1-plddts_87.89553.pdb
dataUrls:
- /pd-t4-1/PD-T4-1__PD-T4-1.cif
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -71,13 +77,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>
## Relevant abstracts
::relevant-abstracts
---
items:
- doi: 10.1371/journal.pgen.1010065
---
::
content/3.defense-systems/pd-t4-10.md
View file @ f741a518
......@@ -45,25 +45,23 @@ The system was detected in 23 different species.
Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.
## Structure
## Structure
### PD-T4-10
##### Example 1
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-t4-10/PD-T4-10,PD-T4-10__PD-T4-10_A,0,V-plddts_88.65128.pdb
---
::
dataUrls:
- /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_B.0.V.cif
- /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_A.0.V.cif
::molstar-pdbe-plugin
---
height: 700
dataUrl: /pd-t4-10/PD-T4-10,PD-T4-10__PD-T4-10_B,0,V-plddts_88.59779.pdb
---
::
## Experimental validation
<mermaid>
graph LR;
Vassallo_2022[<a href='https://doi.org/10.1038/s41564-022-01219-4'>Vassallo et al., 2022</a>] --> Origin_0
......@@ -91,3 +89,4 @@ end
style Title3 fill:none,stroke:none,stroke-width:none
style Title4 fill:none,stroke:none,stroke-width:none
</mermaid>