Reviewing rst_helicaseduf2290 : checklist

This is a guide to help you review an article of the wiki about the system rst_helicaseduf2290. (If reading from you mail client, you can click on the link with the # above to go to the issue directly)

Link to all you issues : https://gitlab.pasteur.fr/mdm-lab/wiki/-/issues/?sort=updated_desc&state=opened&milestone_title=%3Atada%3A%20Hackaton%20%21&assignee_username%5B%5D=emordret&first_page_size=20

The article for the system is there : https://defense-finder.pasteur.cloud/wiki/defense-systems/rst_helicaseduf2290

[If it's slow, wait, it might fail (Time out from you browser), but you'll notice that :8080 has been inserted in the url, just remove it and reload the page. It's faster then to continue browsing from the website directly rather than opening another link, it's a bug we're aware of and we're tracking it]

You can find help here on how to edit : https://defense-finder.pasteur.cloud/wiki/help#_2-edit-a-page

Foud have further details here on what to do for each section : https://gitlab.pasteur.fr/mdm-lab/wiki/-/blob/main/helpers/system-template.md?ref_type=heads&plain=1

Please check that all the following criteria are met to consider that a page is complete and correct.

• The article is correctly structured. It should contain :
  1. Header with the following fields (please pay attention to block indentation) --> /!\ This is not visible from the webpage, you need to edit it to see this part.

---
title: 
tableColumns: 
  article:
    doi: 
    abstract: 
  Sensor: 
  Activator: 
  Effector: 
  PFAM: 
contributors: 
  - Firstname Lastname
relevantAbstracts:
  - doi: my-doi
  - doi: my-doi2
---

• The header contains all the required information. The information provided in the header is required to display the list of defense systems.

  • The mandatory fields are :
    • title:
    • tableColumns:
      • article:
        • doi:
        • abstract:
    • contributors
    • relevantAbstract
  • Optional fields are :
    • Sensor
    • Activator
    • Effector
    • PFAM
  2. The following paragraphs are in the correct order
     • Description
     • Molecular mechanisms
     • Example of genomic structure
     • Distribution of the system among prokaryotes
     • Structure (a plugin)
     • Experimental validation (a graph)
     • Relevant Abstract (Automatic)
     • References (Automatic)
  • Main title is correct. For a defense system, it should simply be the name of the system.
  • All the information is provided, correct and understandable. Rule of thumb : As a newcommer in the field, does the page provide the essential information in a clear way regarding the system ?
    • Short description of the system
    • Composition of the system
    • Mechanism of action if it is known
    • References to the literature to further explore the defense system,
    • inline references should have the following syntax : :ref{doi=my-doi}.
    • Distribution of the system among prokaryotes
    • Structure display
  • At least one relevant abstract is provided. (see frontmatter)
  • Old syntax is removed, eg:
    • There should not be any section ## Relevant abstract (with items and doi below), it's now automatic
    • Reference in the text shouldn't be (1) or (Toto et al) but :ref{doi=my-doi} It will be automatically replaced

You can create a Merge request at any time and continue working on it later

In your MR message, link it to this issue #271 (closed)