NCBI taxonomy creation

• Also improve performances for KEGG orthology creation

Closes #13 (closed)

added Backend:core Doing Python labels

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• f769d567 - update ncbi_tax repo and add tests

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• b8284681 - Improve NCBI tax parser with pydantic
• 06039982 - continue creation of NCBI taxonomy entries

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• 666ec45f - improve coverage of ncbi tax db creation use case

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to improve performances : https://docs.sqlalchemy.org/en/13/faq/performance.html#i-m-inserting-400-000-rows-with-the-orm-and-it-s-really-slow

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• 54e50bf6 - improve emptying of database
• 43000c54 - improve kegg creation performances

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added 2 commits

• fbaae35d - remove unused upsert
• 4070fab8 - add batch for NCBI taxonomy repo

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added 1 commit

• e3f601db - refacto db creation

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added 1 commit

• 29500516 - improve performances of pagination

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marked this merge request as ready

merged

mentioned in commit 70908b05