update metaphlan3 and add strainphlan (!6) · Merge requests · Metagenomics / snakemake · GitLab

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Merged Kenzo-Hugo Hillion requested to merge 21-metaphlan3 into master 4 years ago

Related to #21 (closed)

Closes #22 (closed)

https://github.com/biobakery/MetaPhlAn/wiki/StrainPhlAn-3.0

Edited 4 years ago by Kenzo-Hugo Hillion

Activity

Kenzo-Hugo Hillion added Doing Snakemake labels 4 years ago

added Doing Snakemake labels
Kenzo-Hugo Hillion changed title from Draft: update metaphlan3 pipeline to Draft: update metaphlan3 and add strainphlan 4 years ago

changed title from Draft: update metaphlan3 pipeline to Draft: update metaphlan3 and add strainphlan
Kenzo-Hugo Hillion changed the description 4 years ago

changed the description
Kenzo-Hugo Hillion @kehillio · 4 years ago

Author Guest

First need to work on #20 (closed) before getting to back to this issue.

It will really facilitate import of snakefiles.
Kenzo-Hugo Hillion added 1 commit 4 years ago
added 1 commit

8a7ec2e8 - update paths from tars to maestro

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Kenzo-Hugo Hillion changed the description 4 years ago

changed the description
Kenzo-Hugo Hillion added 1 commit 4 years ago
added 1 commit

6e60eb18 - start structure for strainphlan tools

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Kenzo-Hugo Hillion added 1 commit 4 years ago
added 1 commit

bd2e900e - add rule for strainphlan

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Kenzo-Hugo Hillion added 1 commit 4 years ago
added 1 commit

38125af0 - add workflow for strainphlan on paired-end

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Kenzo-Hugo Hillion unmarked as a Work In Progress 4 years ago

unmarked as a Work In Progress
Kenzo-Hugo Hillion mentioned in commit cca807a5 4 years ago

mentioned in commit cca807a5
Kenzo-Hugo Hillion merged 4 years ago

merged

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