Issues · Roberto José TORO OLMEDO / BrainBox

New issue

[bug] Settting page on BrainBox not working on Firefox, Windows

#204 · created Oct 29, 2018 by Roberto José TORO OLMEDO
- 0
updated Oct 29, 2018
Open Science Framework offers token functionality for their API – check if this could work for private projects in BrainBox

#220 · created Nov 26, 2018 by Roberto José TORO OLMEDO enhancement question
- 0
updated Nov 26, 2018
GitHub user names containing a dash do not work with BrainBox

#200 · created Jul 17, 2018 by Roberto José TORO OLMEDO bug
- 0
updated Aug 07, 2018
'flickering' screen upon login / change to user page...

#216 · created Nov 02, 2018 by Roberto José TORO OLMEDO
- 0
updated Nov 02, 2018
Ferret brain coronal and sagittal projection swapped

#188 · created Oct 28, 2017 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
web container only listens on ipv6 addr (when running using docker-compose)

#198 · created May 10, 2018 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
node-gyp build errors when trying to build/run using docker-compose

#197 · created May 10, 2018 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
masks downloaded via api have broken header

#199 · created May 13, 2018 by Roberto José TORO OLMEDO bug
- 0
updated Aug 07, 2018
NPM security warnings when build/run using docker-compose

#194 · created May 10, 2018 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
Reorganise the user interface

#189 · created Dec 12, 2017 by Roberto José TORO OLMEDO design enhancement help wanted
- 1
updated Aug 07, 2018
Zoom Function

#153 · created Jun 01, 2017 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
BRRRAAaaaaiiiiNNNNNZZZZZ!!!!

#177 · created Oct 18, 2017 by Roberto José TORO OLMEDO BRRRAAaaaaiiiiNNNNNZZZZZ!!!! Hacktoberfest help wanted mozsprint
- 4
updated Aug 07, 2018
make eslint happy

#168 · created Oct 18, 2017 by Roberto José TORO OLMEDO Hacktoberfest enhancement help wanted mozsprint
- 8
updated Sep 30, 2018
download the brain data from the server (not only send images to the client)

#164 · created Oct 17, 2017 by Roberto José TORO OLMEDO Hacktoberfest feature request help wanted
- 0
updated Aug 07, 2018
deleting volume annotation

#154 · created Sep 14, 2017 by Roberto José TORO OLMEDO bug
- 0
updated Aug 07, 2018
Yoking across viewers

#152 · created May 09, 2017 by Roberto José TORO OLMEDO enhancement
- 0
updated Aug 07, 2018
annotation not showing up

#142 · created Feb 17, 2017 by Roberto José TORO OLMEDO
- 1
updated Feb 17, 2017
drawing in one brain will also appear in another subject that I (logged in) have open as a reference

#141 · created Feb 15, 2017 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
Add 'Try to reconnect now' option during reconnection

#139 · created Dec 05, 2016 by Roberto José TORO OLMEDO enhancement
- 0
updated Aug 07, 2018
update modification date and user when a volume annotation is edited

#126 · created Nov 14, 2016 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
Can't name volume annotation

#114 · created Nov 08, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
server crashing on data download

#144 · created Apr 02, 2017 by Roberto José TORO OLMEDO bug
- CLOSED
- 2
updated Aug 07, 2018
Set up Mocha for testing the code, and puppeteer or selenium for the UI?

#157 · created Oct 17, 2017 by Roberto José TORO OLMEDO Hacktoberfest enhancement help wanted
- CLOSED
- 1
updated Aug 07, 2018
Change jQuery Promises into Ecma Promises

#156 · created Oct 17, 2017 by Roberto José TORO OLMEDO Hacktoberfest enhancement help wanted
- CLOSED
- 3
updated Sep 30, 2018
track IXI dataset

#68 · created Oct 16, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 5
updated Aug 07, 2018
header of nifti file generated by BrainBox is missing some little piece of information

#160 · created Oct 17, 2017 by Roberto José TORO OLMEDO Hacktoberfest bug help wanted
- CLOSED
- 1
updated Aug 07, 2018
csv upload should respect a standard csv

#71 · created Oct 16, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 3
updated Aug 07, 2018
nibabel cannot open downloaded aseg.nii.gz from brainbox

#151 · created Apr 13, 2017 by Roberto José TORO OLMEDO
- CLOSED
- 3
updated Apr 15, 2017
Do not allow multiple annotations with the same name and project

#121 · created Nov 12, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Provide feedback on the home page when downloading an MRI

#93 · created Oct 21, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
a delete button on project settings page?

#79 · created Oct 19, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 1
updated Aug 07, 2018
Load, Edit, and Export Freesurfer Segmentations

#15 · created Jun 25, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Disable double-tap zoom

#140 · created Feb 15, 2017 by Roberto José TORO OLMEDO bug
- CLOSED
- 1
updated Aug 07, 2018
a link to jump to project page down there where clicking save project

#109 · created Nov 07, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 3
updated Aug 07, 2018
Real-time update of drawing is broken

#231 · created Dec 15, 2019 by Roberto José TORO OLMEDO
- CLOSED
- 0
updated Dec 15, 2019
on the create project page none of the buttons appear to work

#101 · created Nov 07, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 4
updated Sep 30, 2018
long entries in chat break the page layout

#87 · created Oct 20, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 1
updated Aug 07, 2018
I can view files that I think I should not be able to

#120 · created Nov 12, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 2
updated Aug 07, 2018
update icons

#37 · created Oct 04, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
nicer 'check' buttons for true/false data input

#55 · created Oct 13, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 1
updated Aug 07, 2018
responsive layout also on

#35 · created Oct 04, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 0
updated Aug 07, 2018
not urgent! deleting project: expected behaviour: empty project settings page

#103 · created Nov 07, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
update abide1 links

#132 · created Nov 23, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 0
updated Aug 07, 2018
Add a measure of the total volume of the segmentation

#9 · created Apr 15, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 1
updated Aug 07, 2018
add 'go to project' button on project settings page

#80 · created Oct 19, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 3
updated Aug 07, 2018
the chat does not scroll

#3 · created Mar 09, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 2
updated Aug 07, 2018
Link to BrainBox from openneu.ro

#30 · created Aug 15, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Sep 30, 2018
can't select different volume annotations on ipad

#112 · created Nov 07, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
image is blurry on iPad

#7 · created Apr 15, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 1
updated Aug 07, 2018
project exists not being rendered properly

#100 · created Nov 07, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 0
updated Aug 07, 2018
Give access to CircleCI

#172 · created Oct 18, 2017 by Roberto José TORO OLMEDO Hacktoberfest feature request help wanted
- CLOSED
- 1
updated Aug 07, 2018
need to test: can you replace names on csv upload?

#92 · created Oct 21, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 7
updated Aug 07, 2018
Security of the dropbox links

#119 · created Nov 12, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
include building atlasmaker tools as part of npm run build

#207 · created Oct 30, 2018 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Nov 24, 2019
hyphens are not allowed in project names, but no feedback is provided to the user

#73 · created Oct 17, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
allow programmatic utilisation through an API

#19 · created Jul 10, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 1
updated Aug 07, 2018
Slider not working on iPad

#5 · created Apr 15, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 1
updated Aug 07, 2018
Clicking twice on iPad zooms the image

#6 · created Apr 15, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 1
updated Aug 07, 2018
ipad: can't select different annotation in mri page

#95 · created Oct 25, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
3D rendering is broken

#42 · created Oct 05, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Lines fold in user page, project tab

#125 · created Nov 14, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
add eslint to BrainBox

#158 · created Oct 17, 2017 by Roberto José TORO OLMEDO Hacktoberfest enhancement help wanted
- CLOSED
- 11
updated Aug 07, 2018
Add "Jump to Slice"

#2 · created Mar 08, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 4
updated Aug 07, 2018
In user page, numbers of files, annotations and projects are not being updated

#127 · created Nov 14, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 0
updated Aug 07, 2018
Real-time update of drawing is broken

#230 · created Dec 15, 2019 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Dec 15, 2019
"Invalid date" displayed for volume annotations created by a project

#115 · created Nov 08, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 0
updated Aug 07, 2018
Split the Monkey Atlas in Cortical and Subcortical sub-atlases

#202 · created Sep 30, 2018 by Roberto José TORO OLMEDO Hacktoberfest
- CLOSED
- 1
updated Oct 29, 2018
2 tools not working in current working repo

#208 · created Oct 30, 2018 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Nov 24, 2019
received proxy error - could not repeat

#102 · created Nov 07, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 2
updated Aug 07, 2018
braincatalogue.org's Ferret does not display

#96 · created Oct 29, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Ability to make private websites with multiple brainbox links

#18 · created Jun 25, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Replace links with titles in "some brains to try" section

#28 · created Aug 08, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
segmentations in project page are locked per default

#136 · created Nov 27, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Artefactual creation of empty atlases

#113 · created Nov 08, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
drawing length info is broken (NaN shown)

#54 · created Oct 13, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Link to blog from openneu.ro

#29 · created Aug 08, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 0
updated Aug 07, 2018
eye dropper tool does not display the name of the region upon click

#159 · created Oct 17, 2017 by Roberto José TORO OLMEDO Hacktoberfest bug help wanted
- CLOSED
- 0
updated Aug 07, 2018
annotation not showing up on individual mri

#99 · created Nov 06, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 1
updated Nov 07, 2016
White text on white background in new project title entry field

#147 · created Apr 06, 2017 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
growing list of labelsets when just scrolling through brains in project page

#34 · created Oct 04, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Anisotropic voxels break the drawing tools

#8 · created Apr 15, 2016 by Roberto José TORO OLMEDO bug
- CLOSED
- 2
updated Aug 07, 2018
check web socket connection

#11 · created May 13, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 1
updated Aug 07, 2018
color-picker tool

#27 · created Aug 08, 2016 by Roberto José TORO OLMEDO enhancement
- CLOSED
- 2
updated Aug 07, 2018
update the structure of the mri objects in the DB to deal with volume and text annotations in the same way

#36 · created Oct 04, 2016 by Roberto José TORO OLMEDO
- 4
updated Aug 07, 2018
download button to download all annotations (volume/text) from one project

#38 · created Oct 04, 2016 by Roberto José TORO OLMEDO enhancement
- 0
updated Aug 07, 2018
Add "subscribe" to site

#13 · created May 15, 2016 by Roberto José TORO OLMEDO
- 1
updated Aug 07, 2018
add ‘public’ back to the 'access' field for project settings/project creation

#39 · created Oct 05, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
add multihash to each downloaded MRI

#43 · created Oct 06, 2016 by Roberto José TORO OLMEDO enhancement
- 1
updated Aug 07, 2018
Read .nii files

#16 · created Jun 25, 2016 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
Edit image orientation

#17 · created Jun 25, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
once autosave is in place, get rid of save icon below table

#46 · created Oct 10, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 2
updated Aug 07, 2018
in full screen mode, the minimised toolbar still capture events

#52 · created Oct 12, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
undo functionality undoes drawing on volume annotations which are not selected (as well as slices within one volume annotation) you do not currently view

#53 · created Oct 12, 2016 by Roberto José TORO OLMEDO bug
- 0
updated Aug 07, 2018
improper orientation

#57 · created Oct 15, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 2
updated Sep 30, 2018
precise cursor is broken

#50 · created Oct 12, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 1
updated Aug 07, 2018
Get the widget version of brainbox working again

#56 · created Oct 14, 2016 by Roberto José TORO OLMEDO
- 0
updated Aug 07, 2018
payload too large for csv upload

#60 · created Oct 15, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 3
updated Aug 07, 2018
fix height of chat region in different displays

#51 · created Oct 12, 2016 by Roberto José TORO OLMEDO bug
- 0
updated Aug 07, 2018
UI needs to be fixed for project page

#59 · created Oct 15, 2016 by Roberto José TORO OLMEDO
- CLOSED
- 2
updated Aug 07, 2018
keep in mind for later: option to transfer ownership of a project

#48 · created Oct 11, 2016 by Roberto José TORO OLMEDO enhancement
- 0
updated Aug 07, 2018