Initial commit

.gitignore

LICENSE

README.md

cgprofiler/__init__.py

cgprofiler/__main__.py

cgprofiler/cgmlst/__init__.py

cgprofiler/cgmlst/allele_calling.py

cgprofiler/cgmlst/autotag.py

cgprofiler/cgmlst/blast_config.py

cgprofiler/cgmlst/blast_functions.py

cgprofiler/cgmlst/cds.py

cgprofiler/cgmlst/constants.py

cgprofiler/cgmlst/data_utils.py

cgprofiler/cgmlst/file_utils.py

cgprofiler/cgmlst/scannew.py

cgprofiler/db/__init__.py

cgprofiler/db/api_bigsdb.py

cgprofiler/db/api_enterobase.py

cgprofiler/db/download_schemes.py

cgprofiler/db/request_schemes_enterobase.py