Update README.md

README.md

@@ -73,26 +73,26 @@ In the example folder, you have example files from the following command:
 - Create DataBase LIN :  
 
 ```bash
-python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,95,99.68,99.74,99.81,99.87,99.94,100
+python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100
 ```
 
 - Update DataBase LIN :
 
 ```bash         
-python LINcode.py -i new_Ecoli.txt -r BIGSdb_eliza.txt -t 1-2 -l 3-
+python LINcode.py -i BIGSdb_eliza_update.txt -r BIGSdb_eliza.lin -t 1-2 -l 3-
 ```
 _______________________________________________________________________________
 
 - Create DataBase LIN + prefix tree without length of branches (newick) :   
 
 ```bash
-python LINcode.py -i BIGSdb.txt -t 1-2 -l 3- -b 1,20,45,66,80,90,95,96,98,99,100 -tree Y 
+python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y 
 ```
 
 - Create DataBase LIN + prefix tree with length of branches (newick) :
 
 ```bash
-python LINcode.py -i BIGSdb.txt -t 1-2 -l 3- -b 1,20,45,66,80,90,95,96,98,99,100 -tree Y -lg Y 
+python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100 -tree Y -lg Y 
 ```
 
 ## Output files
@@ -101,8 +101,8 @@ python LINcode.py -i BIGSdb.txt -t 1-2 -l 3- -b 1,20,45,66,80,90,95,96,98,99,100
 
 Name | content |
 ---- | ------- |
-BIGSdb.lin | LIN Database |
-LIN_BIGSdb.txt| LIN Isolates List |
+BIGSdb_eliza.lin | LIN Database |
+LIN_BIGSdb_eliza.txt| LIN Isolates List |
  
 - Option (-tree or -lg)