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Commit bfb6f93d authored by Alexis  CRISCUOLO's avatar Alexis CRISCUOLO :black_circle:
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......@@ -114,7 +114,7 @@ hierarchical tree data.nwk
minimum spanning tree data.graphml
```
Of note, using option `-e 0.05` causes the removal of the fifth profile (8.19% missing entries).
The pairwise distance matrix is written into _data.d_ (available in _src/_), and options `-m` and `-h` yield the creation of the files _data.graphml_ and _data.nwk_.
The pairwise distance matrix is written into _data.d_ (available in _example/_), and options `-m` and `-h` yield the creation of the files _data.graphml_ and _data.nwk_.
**MST-based clustering from distance data**
......@@ -187,7 +187,7 @@ This will output:
n c k silhouette noise silhouette [low avg up] noise aWallace1 [low avg up] noise aWallace2 [low avg up] nAUC silhouette [low avg up] nAUC aWallace1 [low avg up] nAUC aWallace2 [low avg up]
413 0.016691213 3 0.829778 0.763112 0.838848 0.918818 0.444911 0.977796 1.000000 0.998107 0.999338 1.000000 0.825384 0.899548 0.938995 1.000000 1.000000 1.000000 0.828055 0.978866 1.000000
```
Details of the corresponding clustering (3 classes) is written into file _clust.txt_ (available in _src/_).
Details of the corresponding clustering (3 classes) is written into file _clust.txt_ (available in _example/_).
A silhouette plot can be easily drawn using the output of the following command line on _clust.txt_:
```bash
grep -F " s=" clust.txt | sed 's/ s=//' | sed 1d
......
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