Commit 4e0ca1a2 authored by Alexis  CRISCUOLO's avatar Alexis CRISCUOLO
Browse files

3.0

parent fa90b05d
......@@ -137,7 +137,7 @@ Run _fastq_info_ without option (or with option `-h`) to read the following docu
* _fastq_info_ is able to consider many input files summarized using [filename expansion](https://tldp.org/LDP/abs/html/globbingref.html), e.g. `dirname/*.fastq.gz`. A warning is displayed when an input file is not a regular one (e.g. directory) or when its extension is unknown. All warning messages can be disabled by ending the command line with `2>/dev/null`.
* All results are always displayed in `stdout` with different formats that can be specified using option `-v`. To write such results into an output file, you can end the command line with e.g. `> $outfile`.
* All results are always displayed in `stdout` with different formats that can be specified using option `-v`. To write such results into an output file, you can end the command line with e.g. `> outfile`.
* In results outputted using options `-v r` or `-v f` (txt tables), every empty entry is indicated by a dot instead of zero. Such dots are replaced by empty entries when using option `-v t` (tsv tables).
......@@ -149,7 +149,7 @@ Run _fastq_info_ without option (or with option `-h`) to read the following docu
* Option `-d` can be useful when dealing with FASTQ files containing non-Unix end-of-lines (e.g. created under Microsoft Windows).
* Option `-t` enables to decompress FASTQ files on multiple threads using dedicated programs, i.e. [pigz](https://zlib.net/pigz/), [pbzip2](http://compression.ca/pbzip2/), [dsrc](http://sun.aei.polsl.pl/dsrc), [fqzcomp](https://github.com/jkbonfield/fqzcomp), [quip](https://github.com/dcjones/quip).
* Option `-t` enables to decompress FASTQ files on multiple threads using dedicated programs, i.e. [pigz](https://zlib.net/pigz/), [pbzip2](http://compression.ca/pbzip2/), [dsrc](http://sun.aei.polsl.pl/dsrc).
......@@ -159,7 +159,7 @@ Run _fastq_info_ without option (or with option `-h`) to read the following docu
The following [Bash](https://www.gnu.org/software/bash/) command line enables to download the pair of gzipped FASTQ files *SRR001666\_1.fastq.gz* and *SRR001666\_2.fastq.gz* to be used as examples:
```bash
wget -q ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR001/SRR001666/SRR001666*.fastq.gz
wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR001/SRR001666/SRR001666*.fastq.gz
```
#### Basic usage
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment