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Unverified Commit 3dec4c43 authored by Andrey Aristov's avatar Andrey Aristov
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update readme

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...@@ -4,13 +4,17 @@ This a snakemake pipeline allowing to reconstruct the 6-chips data automatically ...@@ -4,13 +4,17 @@ This a snakemake pipeline allowing to reconstruct the 6-chips data automatically
## Installation ## Installation
git clone https://gitlab.pasteur.fr/aaristov/multichip-snakemake.git
cd multichip-snakemake
pip install -r requirements.txt
## Running locally ## Running locally
On Elissa computer find and launch the icon on the desktop "Snakemake". On Athena computer find and launch the icon on the desktop "Snakemake".
The terminal will open. The terminal will open.
The command to launch reconstruction: The command to launch reconstruction:
``` ```
snakemake -c12 D:\Andrey\Data\path_to_final_table.csv snakemake -c1 D:\Andrey\Data\path_to_final_table.csv
``` ```
For conveniense it is possible to drag and drop the folder into the terminal to get a valid path, then simply add the missing filename at the end. For conveniense it is possible to drag and drop the folder into the terminal to get a valid path, then simply add the missing filename at the end.
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