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- .submission_template.sh.swp 0 additions, 0 deletions.submission_template.sh.swp
- README.md 28 additions, 0 deletionsREADME.md
- Utils/Rscript/.DS_Store 0 additions, 0 deletionsUtils/Rscript/.DS_Store
- Utils/Rscript/Draw_barplot.R 63 additions, 0 deletionsUtils/Rscript/Draw_barplot.R
- Utils/Rscript/Resistance/.DS_Store 0 additions, 0 deletionsUtils/Rscript/Resistance/.DS_Store
- Utils/Rscript/Resistance/.Rhistory 0 additions, 0 deletionsUtils/Rscript/Resistance/.Rhistory
- Utils/Rscript/Resistance/ResFinder_Count2perc_nbcount.R 62 additions, 0 deletionsUtils/Rscript/Resistance/ResFinder_Count2perc_nbcount.R
- Utils/Rscript/Species/.DS_Store 0 additions, 0 deletionsUtils/Rscript/Species/.DS_Store
- Utils/Rscript/Species/.Rhistory 0 additions, 0 deletionsUtils/Rscript/Species/.Rhistory
- Utils/Rscript/Species/RefMG.v1.padded.refmg.map.rownames 0 additions, 0 deletionsUtils/Rscript/Species/RefMG.v1.padded.refmg.map.rownames
- Utils/Rscript/Species/RefMG_Count2perc_nbcount.R 74 additions, 0 deletionsUtils/Rscript/Species/RefMG_Count2perc_nbcount.R
- Utils/cluster2multifasta.py 112 additions, 0 deletionsUtils/cluster2multifasta.py
- Utils/jobs_make_matrices.sh 33 additions, 0 deletionsUtils/jobs_make_matrices.sh
- Utils/make_matrices.py 209 additions, 0 deletionsUtils/make_matrices.py
- count_matrix.py 138 additions, 0 deletionscount_matrix.py
- counting.py 536 additions, 0 deletionscounting.py
- databases/.DS_Store 0 additions, 0 deletionsdatabases/.DS_Store
- databases/._.DS_Store 0 additions, 0 deletionsdatabases/._.DS_Store
- databases/RefMG.v1.padded 0 additions, 0 deletionsdatabases/RefMG.v1.padded
- databases/clustered_ResFinder.dict 0 additions, 0 deletionsdatabases/clustered_ResFinder.dict
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