Skip to content
Snippets Groups Projects
Commit ff95d68c authored by Amine  GHOZLANE's avatar Amine GHOZLANE
Browse files

correct indent

parent c56bb740
No related branches found
No related tags found
No related merge requests found
......@@ -620,16 +620,16 @@ echo "Elapsed time with GATK : $(timer $start_time_variant)
# count matrix creation
with open("{0}/stdout.txt".format(args['outdir']),"at") as out:
with open("{0}/stderr.txt".format(args['outdir']),"at") as err:
try :
commandline = ("python {0}/count_matrix.py -d {1}/comptage "
"-o {1}/comptage/count_matrix.tsv".format(script_path,
args['outdir']))
try :
commandline = ("python {0}/count_matrix.py -d {1}/comptage "
"-o {1}/comptage/count_matrix.tsv".format(script_path,
args['outdir']))
args = shlex.split(commandline)
p = subprocess.call(args,stdout=out, stderr=err)
args = shlex.split(commandline)
p = subprocess.call(args,stdout=out, stderr=err)
except subprocess.CalledProcessError as e:
p = e.p
sys.exit(e.returncode)
except subprocess.CalledProcessError as e:
p = e.p
sys.exit(e.returncode)
print("\nMBMA successfully completed")
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment