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Created with Raphaël 2.2.020Sep1820Jul314Jun11629May282726251210754327Apr2625222120171615141110987654Update setup.pymastermasterUpdate utils.pyUpdate seq_curation.pyUpdate finalization_curation.pyUpdate data_curation.pyUpdate common.pyUpdate licenceUpdate GPL LICENSEupdated version of the toolupdated version of the toolignore details after | in sequence name from covsurverassembly method is not mandatory fieldgenerated curated xls even if fasta not givengenerated curated xls even if fasta not givenhand-back if >50% N and Alert if >2% uniqmutfix typoMerge branch 'master' of gitlab.pasteur.fr:aperrin/curation_toolstop after metadata curation when no fasta givenUpdate README.mdUpdate README.mdUpdate README.mdremove '-' in fasta seqsfix install commandxxxxxx_curation -> curation_toolcovsurver-curat…covsurver-curation devxxxxxx_curation -> curation_toolFix hand back xls remove when vname changesnew value for vnameadd missing seq statement in hand-back sequencesfix removal of hand back sequences in fastaMerge branch 'master' into devAdd info on how many sequences to checkwrite summary of nb of sequences at the endCheck fasta before merging covsurver and xlsalways put curated fasta name in fn xls columnFor sequencing technology, add default values in messageaccept coverage with '>', 'average' etc.Possibility to put a new value for virus name Country (neither the original one nor the country in location)Remove multiple \n between line checksChange vnames in fasta and xlsIf country already changed in vname, change to the same