Dockerfile

from ubuntu:16.04

# Update apt-get packages
RUN apt-get update &&\
    apt-get -y upgrade

# Install package needed
RUN apt-get install -y \
        wget \
        libdatetime-perl \
        libxml-simple-perl \
        libdigest-md5-perl \
        git \
        python3-pip \
        default-jre \
        bioperl

# Update pip
RUN pip3 install --upgrade pip