Skip to content

GitLab

Explore

Sign in

Primary navigation

Project

P

panacota
- Activity
- Members
- Labels
- Environments
- Incidents

Snippets Groups Projects

0219b38d

Commit 0219b38d authored 4 years ago by Amandine PERRIN

Downloads
- Patches
- Plain Diff

Add tests for prodigal formatting

parent ac76204b

No related branches found

No related tags found

No related merge requests found

Changes 7

Expand all Hide whitespace changes

Inline Side-by-side

Showing

PanACoTA/annotate_module/format_prodigal.py 1 addition, 1 deletion

PanACoTA/annotate_module/format_prodigal.py
PanACoTA/utils.py 15 additions, 10 deletions

PanACoTA/utils.py
test/data/annotate/test_files/original_name.fna-prodigalRes/prodigal.outtest.ok.ffn 3 additions, 3 deletions

...les/original_name.fna-prodigalRes/prodigal.outtest.ok.ffn
test/data/annotate/test_files/prodigal.outtest.wrong-end.gff 2084 additions, 0 deletions

test/data/annotate/test_files/prodigal.outtest.wrong-end.gff
test/data/annotate/test_files/prodigal.outtest.wrong-type.gff 2084 additions, 0 deletions

.../data/annotate/test_files/prodigal.outtest.wrong-type.gff
test/data/annotate/test_files/test_create_prt_prodigal-more-proteins.lst 1 addition, 1 deletion

...ate/test_files/test_create_prt_prodigal-more-proteins.lst
test/test_unit/test_annotate/test_format_prodigal.py 117 additions, 24 deletions

test/test_unit/test_annotate/test_format_prodigal.py

with 4305 additions and 39 deletions

Loading

0% Loading or .

You are about to add 0 people to the discussion. Proceed with caution.

Finish editing this message first!

Please register or sign in to comment