Commit 0e3574aa authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Update mmseqs installation

parent ecebd520
Pipeline #15908 passed with stage
in 7 minutes and 51 seconds
from ubuntu:latest
from ubuntu:18.04
# Update apt-get packages
......@@ -16,17 +16,14 @@ RUN apt-get install -y \
RUN pip3 install --upgrade pip
# Install mmseqs2
# Install MMseqs2 Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e
WORKDIR /tmp
RUN apt-get install -y \
cmake\
git &&\
wget https://mmseqs.com/latest/mmseqs-static_sse41.tar.gz &&\
tar xf mmseqs-static_sse41.tar.gz &&\
rm mmseqs-static_sse41.tar.gz &&\
mv /tmp/mmseqs2/bin/mmseqs /usr/local/bin &&\
RUN wget https://mmseqs.com/latest/mmseqs-linux-sse41.tar.gz &&\
tar xvfz mmseqs-linux-sse41.tar.gz &&\
rm mmseqs-linux-sse41.tar.gz &&\
mv /tmp/mmseqs/bin/mmseqs /usr/local/bin &&\
# remove useless files
rm -r /tmp/mmseqs2
rm -r /tmp/mmseqs
# Install FastME
......
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