Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Amandine PERRIN
pipeline_annotation
Commits
0e3574aa
Commit
0e3574aa
authored
Oct 07, 2019
by
Amandine PERRIN
Browse files
Update mmseqs installation
parent
ecebd520
Pipeline
#15908
passed with stage
in 7 minutes and 51 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
for_build/mmseqs_and_fastme/Dockerfile
View file @
0e3574aa
from
ubuntu:
latest
from
ubuntu:
18.04
# Update apt-get packages
...
...
@@ -16,17 +16,14 @@ RUN apt-get install -y \
RUN
pip3
install
--upgrade
pip
# Install
mm
seqs2
# Install
MM
seqs2
Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e
WORKDIR
/tmp
RUN
apt-get
install
-y
\
cmake
\
git
&&
\
wget https://mmseqs.com/latest/mmseqs-static_sse41.tar.gz
&&
\
tar
xf mmseqs-static_sse41.tar.gz
&&
\
rm
mmseqs-static_sse41.tar.gz
&&
\
mv
/tmp/mmseqs2/bin/mmseqs /usr/local/bin
&&
\
RUN
wget https://mmseqs.com/latest/mmseqs-linux-sse41.tar.gz
&&
\
tar
xvfz mmseqs-linux-sse41.tar.gz
&&
\
rm
mmseqs-linux-sse41.tar.gz
&&
\
mv
/tmp/mmseqs/bin/mmseqs /usr/local/bin
&&
\
# remove useless files
rm -r /tmp/mmseqs
2
rm -r /tmp/mmseqs
# Install FastME
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment