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Commit 17312d7f authored by Amandine  PERRIN's avatar Amandine PERRIN
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Clean utils script

parent 179a6277
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...@@ -369,8 +369,8 @@ def write_warning_skipped(skipped, do_format=False, prodigal_only=False, logfile ...@@ -369,8 +369,8 @@ def write_warning_skipped(skipped, do_format=False, prodigal_only=False, logfile
soft = "prodigal" soft = "prodigal"
logger = logging.getLogger("utils") logger = logging.getLogger("utils")
list_to_write = "\n".join(["\t- " + genome for genome in skipped]) list_to_write = "\n".join(["\t- " + genome for genome in skipped])
# print(list_to_write)
if not do_format: if not do_format:
logger.info("WARNING: Some genomes could not be annotated. See {0}".format(logfile))
logger.warning("{0} had problems while annotating some genomes, or " logger.warning("{0} had problems while annotating some genomes, or "
"did not find any gene. Hence, they are not formatted, and absent " "did not find any gene. Hence, they are not formatted, and absent "
"from your output database. Please look at the " "from your output database. Please look at the "
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