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Amandine PERRIN
panacota
Commits
2691400e
Commit
2691400e
authored
2 years ago
by
Amandine PERRIN
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Merge github master
parent
fa50c722
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Pipeline
#94689
failed
2 years ago
Stage: test
Stage: coverage
Stage: doc
Stage: deploy
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test/test_unit/test_prepare/test_download.py
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test/test_unit/test_prepare/test_download.py
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View file @
2691400e
...
@@ -694,8 +694,14 @@ def test_download_refseq_vs_genbank(caplog):
...
@@ -694,8 +694,14 @@ def test_download_refseq_vs_genbank(caplog):
"""
"""
Give a taxid of a subspecies, download strains from refseq, and then from genbank.
Give a taxid of a subspecies, download strains from refseq, and then from genbank.
Currently, no strains in refseq, and 2 in genbank.
Currently, no strains in refseq, and 2 in genbank.
<<<<<<< HEAD
39831 = Klebsiella pneumoniae subsp. rhinoscleromatis
39831 = Klebsiella pneumoniae subsp. rhinoscleromatis
(60 = Vitreoscilla sp.)
(60 = Vitreoscilla sp.)
=======
urrently, no strains in refseq, and 8 in genbank.
#39831 = Klebsiella pneumoniae subsp. rhinoscleromatis
60 = Vitreoscilla sp.
>>>
>>>>
0896
f49
(
change
taxid
to
compare
refseq
vs
genbank
)
Later
,
there
can
be
some
in
refseq
,
but
always
at
least
2
more
in
genbank
Later
,
there
can
be
some
in
refseq
,
but
always
at
least
2
more
in
genbank
"""
"""
caplog
.
set_level
(
logging
.
INFO
)
caplog
.
set_level
(
logging
.
INFO
)
...
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