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Amandine PERRIN
pipeline_annotation
Commits
37456c10
Commit
37456c10
authored
Oct 07, 2019
by
Amandine PERRIN
Browse files
test installation of docker image for tests
parent
9ec0a3d1
Pipeline
#15888
failed with stage
in 6 minutes and 55 seconds
Changes
1
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1
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for_tests/Dockerfile
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37456c10
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@@ -76,23 +76,22 @@ RUN make clean &&\
make
install
## Install FastTree
#WORKDIR /tmp
#RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
# gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP #FastTree.c -lm &&\#
# ln -s /tmp/FastTre#eMP /usr/local/bin#
#
#
## Install FastME
#WORKDIR /tmp
#RUN apt-get install -y automake &&\
# git clone https://gite.lirmm.fr/atgc/FastME.git
#WORKDIR /tmp/FastME
#RUN ./configure &&\
# make &&\
# make install
#
#
# Install FastTree version 2.1.11 Double precision (No SSE3)
WORKDIR
/tmp
RUN
wget http://www.microbesonline.org/fasttree/FastTree.c
&&
\
gcc
-DOPENMP
-fopenmp
-DUSE_DOUBLE
-Wall
-O3
-finline-functions
-funroll-loops
-o
FastTreeMP FastTree.c
-lm
&&
\#
ln
-s
/tmp/FastTre#eMP /usr/local/bin#
# Install FastME FastME 2.1.6.1
WORKDIR
/tmp
RUN
apt-get
install
-y
automake
&&
\
git clone https://gite.lirmm.fr/atgc/FastME.git
WORKDIR
/tmp/FastME
RUN
./configure
&&
\
make
&&
\
make
install
## Install quicktree
#WORKDIR /tmp
#RUN git clone https://github.com/tseemann/quicktree
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